RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 GIGYF2Q6Y7W6 1299 aaKnown RBP9.8□□□□□ -0.84
CD44-215ENST00000525241 STAC3Q96MF2 364 aa9.8□□□□□ -0.84
CD44-215ENST00000525241 KDM4CQ9H3R0 1056 aa9.8□□□□□ -0.84
CD44-215ENST00000525241 SWT1Q5T5J6 900 aaKnown RBP9.79□□□□□ -0.84
CD44-215ENST00000525241 SAMD7Q7Z3H4 446 aa9.78□□□□□ -0.84
CD44-215ENST00000525241 FAM217BQ9NTX9 383 aaPredicted RBP9.78□□□□□ -0.84
CD44-215ENST00000525241 MS4A1P11836 297 aa9.76□□□□□ -0.85
CD44-215ENST00000525241 SSTR3P32745 418 aaPredicted RBP9.76□□□□□ -0.85
CD44-215ENST00000525241 HDGFP51858 240 aaKnown RBP9.76□□□□□ -0.85
CD44-215ENST00000525241 GOLGA8CPA6NN73 597 aa9.75□□□□□ -0.85
CD44-215ENST00000525241 DDX11L8A8MPP1 907 aa9.73□□□□□ -0.85
CD44-215ENST00000525241 SLC10A3P09131 477 aa9.73□□□□□ -0.85
CD44-215ENST00000525241 ANKK1Q8NFD2 765 aa9.73□□□□□ -0.85
CD44-215ENST00000525241 WNT2BQ93097 391 aa9.73□□□□□ -0.85
CD44-215ENST00000525241 LRCH3Q96II8 777 aa9.73□□□□□ -0.85
CD44-215ENST00000525241 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.73□□□□□ -0.85
CD44-215ENST00000525241 SOWAHBA6NEL2 793 aa9.72□□□□□ -0.85
CD44-215ENST00000525241 CD46P15529 392 aa9.72□□□□□ -0.85
CD44-215ENST00000525241 SULF1Q8IWU6 871 aa9.72□□□□□ -0.85
CD44-215ENST00000525241 SLF2Q8IX21 1173 aa9.72□□□□□ -0.85
CD44-215ENST00000525241 FAM117AQ9C073 453 aa9.72□□□□□ -0.85
CD44-215ENST00000525241 SPNS2Q8IVW8 549 aa9.71□□□□□ -0.86
CD44-215ENST00000525241 BCAMP50895 628 aa9.7□□□□□ -0.86
CD44-215ENST00000525241 PLEKHG3A1L390 1219 aa9.69□□□□□ -0.86
CD44-215ENST00000525241 KCTD12Q96CX2 325 aaKnown RBP9.69□□□□□ -0.86
CD44-215ENST00000525241 BEGAINQ9BUH8 593 aa9.69□□□□□ -0.86
CD44-215ENST00000525241 MYT1LQ9UL68 1186 aa9.69□□□□□ -0.86
CD44-215ENST00000525241 RNF40O75150 1001 aa9.68□□□□□ -0.86
CD44-215ENST00000525241 SLC4A3P48751 1232 aa9.68□□□□□ -0.86
CD44-215ENST00000525241 THSD4Q6ZMP0 1018 aa9.68□□□□□ -0.86
CD44-215ENST00000525241 RDH13Q8NBN7 331 aa9.68□□□□□ -0.86
CD44-215ENST00000525241 RSPH4AQ5TD94 716 aa9.67□□□□□ -0.86
CD44-215ENST00000525241 IL27Q8NEV9 243 aa9.67□□□□□ -0.86
CD44-215ENST00000525241 DDRGK1Q96HY6 314 aa9.67□□□□□ -0.86
CD44-215ENST00000525241 GCGRP47871 477 aa9.66□□□□□ -0.86
CD44-215ENST00000525241 TSR3Q9UJK0 312 aaKnown RBP9.66□□□□□ -0.86
CD44-215ENST00000525241 HPS5Q9UPZ3 1129 aa9.66□□□□□ -0.86
CD44-215ENST00000525241 PPP4CP60510 307 aa9.64□□□□□ -0.87
CD44-215ENST00000525241 WBP1LQ9NX94 342 aa9.64□□□□□ -0.87
CD44-215ENST00000525241 CFHP08603 1231 aa9.63□□□□□ -0.87
CD44-215ENST00000525241 NECTIN2Q92692 538 aa9.63□□□□□ -0.87
CD44-215ENST00000525241 TMEM132AQ24JP5 1023 aa9.61□□□□□ -0.87
CD44-215ENST00000525241 SPIRE2Q8WWL2 714 aa9.61□□□□□ -0.87
CD44-215ENST00000525241 RNF166Q96A37 237 aaPredicted RBP9.61□□□□□ -0.87
CD44-215ENST00000525241 TBC1D2Q9BYX2 928 aa9.61□□□□□ -0.87
CD44-215ENST00000525241 KDM4AO75164 1064 aa9.6□□□□□ -0.87
CD44-215ENST00000525241 APLP1P51693 650 aa9.6□□□□□ -0.87
CD44-215ENST00000525241 NUTM1Q86Y26 1132 aa9.6□□□□□ -0.87
CD44-215ENST00000525241 PTPN5P54829 565 aa9.59□□□□□ -0.87
CD44-215ENST00000525241 KMT5BQ4FZB7 885 aa9.59□□□□□ -0.87
CD44-215ENST00000525241 ACTN4O43707 911 aaKnown RBP9.58□□□□□ -0.88
CD44-215ENST00000525241 MMRN1Q13201 1228 aa9.58□□□□□ -0.88
CD44-215ENST00000525241 DIXDC1Q155Q3 683 aa9.58□□□□□ -0.88
CD44-215ENST00000525241 RSPH6AQ9H0K4 717 aa9.58□□□□□ -0.88
CD44-215ENST00000525241 USP46P62068 366 aa9.57□□□□□ -0.88
CD44-215ENST00000525241 FUT2Q10981 343 aa9.57□□□□□ -0.88
CD44-215ENST00000525241 SH3D19Q5HYK7 790 aa9.57□□□□□ -0.88
CD44-215ENST00000525241 MYSM1Q5VVJ2 828 aa9.57□□□□□ -0.88
CD44-215ENST00000525241 PRR14Q9BWN1 585 aa9.57□□□□□ -0.88
CD44-215ENST00000525241 HOXA2O43364 376 aa9.56□□□□□ -0.88
CD44-215ENST00000525241 NYAP1Q6ZVC0 841 aa9.56□□□□□ -0.88
CD44-215ENST00000525241 GOPCQ9HD26 462 aa9.56□□□□□ -0.88
CD44-215ENST00000525241 MOXD2PA6NHM9 499 aa9.55□□□□□ -0.88
CD44-215ENST00000525241 NDUFV2P19404 249 aa9.54□□□□□ -0.88
CD44-215ENST00000525241 ATP6V1AP38606 617 aa9.54□□□□□ -0.88
CD44-215ENST00000525241 SKIV2LQ15477 1246 aaKnown RBP9.54□□□□□ -0.88
CD44-215ENST00000525241 HLA-CQ95604 372 aa9.54□□□□□ -0.88
CD44-215ENST00000525241 POLR3EQ9NVU0 708 aa9.54□□□□□ -0.88
CD44-215ENST00000525241 SPTLC1O15269 473 aa9.53□□□□□ -0.88
CD44-215ENST00000525241 PUS10Q3MIT2 529 aaKnown RBP9.53□□□□□ -0.88
CD44-215ENST00000525241 RSBN1LQ6PCB5 846 aaPredicted RBP9.53□□□□□ -0.88
CD44-215ENST00000525241 HCSTQ9UBK5 93 aa9.53□□□□□ -0.88
CD44-215ENST00000525241 MORN1Q5T089 497 aa9.52□□□□□ -0.89
CD44-215ENST00000525241 RIC3Q7Z5B4 369 aa9.52□□□□□ -0.89
CD44-215ENST00000525241 LIMD1Q9UGP4 676 aa9.52□□□□□ -0.89
CD44-215ENST00000525241 PCDHB3Q9Y5E6 796 aa9.52□□□□□ -0.89
CD44-215ENST00000525241 GJA5P36382 358 aa9.51□□□□□ -0.89
CD44-215ENST00000525241 CLK2P49760 499 aaKnown RBP9.51□□□□□ -0.89
CD44-215ENST00000525241 GUCA2AQ02747 115 aa9.51□□□□□ -0.89
CD44-215ENST00000525241 GRIPAP1Q4V328 841 aa9.51□□□□□ -0.89
CD44-215ENST00000525241 PROCA1Q8NCQ7 364 aaPredicted RBP9.51□□□□□ -0.89
CD44-215ENST00000525241 PCDHGC3Q9UN70 934 aa9.5□□□□□ -0.89
CD44-215ENST00000525241 FDX1P10109 184 aa9.49□□□□□ -0.89
CD44-215ENST00000525241 TUSC1Q2TAM9 212 aa9.49□□□□□ -0.89
CD44-215ENST00000525241 BLOC1S3Q6QNY0 202 aa9.49□□□□□ -0.89
CD44-215ENST00000525241 SLC27A5Q9Y2P5 690 aa9.49□□□□□ -0.89
CD44-215ENST00000525241 PCDHB15Q9Y5E8 787 aa9.49□□□□□ -0.89
CD44-215ENST00000525241 PCMTD1Q96MG8 357 aaPredicted RBP9.48□□□□□ -0.89
CD44-215ENST00000525241 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.48□□□□□ -0.89
CD44-215ENST00000525241 TJAP1Q5JTD0 557 aa9.47□□□□□ -0.89
CD44-215ENST00000525241 SCUBE3Q8IX30 993 aa9.47□□□□□ -0.89
CD44-215ENST00000525241 MTRQ99707 1265 aa9.47□□□□□ -0.89
CD44-215ENST00000525241 COPS2P61201 443 aa9.46□□□□□ -0.9
CD44-215ENST00000525241 NR1I2O75469 434 aa9.45□□□□□ -0.9
CD44-215ENST00000525241 FBXO31Q5XUX0 539 aaPredicted RBP9.45□□□□□ -0.9
CD44-215ENST00000525241 LILRB3O75022 631 aa9.44□□□□□ -0.9
CD44-215ENST00000525241 QPCTQ16769 361 aa9.44□□□□□ -0.9
CD44-215ENST00000525241 CSPP1Q1MSJ5 1256 aa9.44□□□□□ -0.9
CD44-215ENST00000525241 HRCP23327 699 aa9.43□□□□□ -0.9
CD44-215ENST00000525241 PRPF38BQ5VTL8 546 aaKnown RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms