RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 V9GY48 417 aaPredicted RBP5.08□□□□□ -1.6
HMGB1-208ENST00000490788 WFS1O76024 890 aa5.07□□□□□ -1.6
HMGB1-208ENST00000490788 PPP4CP60510 307 aa5.07□□□□□ -1.6
HMGB1-208ENST00000490788 RBM46Q8TBY0 533 aaKnown RBP5.07□□□□□ -1.6
HMGB1-208ENST00000490788 NPDC1Q9NQX5 325 aaPredicted RBP5.07□□□□□ -1.6
HMGB1-208ENST00000490788 TSKSQ9UJT2 592 aa5.07□□□□□ -1.6
HMGB1-208ENST00000490788 TATDN2Q93075 761 aa5.06□□□□□ -1.6
HMGB1-208ENST00000490788 OATP04181 439 aa5.05□□□□□ -1.6
HMGB1-208ENST00000490788 TJAP1Q5JTD0 557 aa5.05□□□□□ -1.6
HMGB1-208ENST00000490788 NUDT18Q6ZVK8 323 aa5.05□□□□□ -1.6
HMGB1-208ENST00000490788 PDZRN3Q9UPQ7 1066 aa5.05□□□□□ -1.6
HMGB1-208ENST00000490788 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.04□□□□□ -1.6
HMGB1-208ENST00000490788 SMAPO00193 183 aa5.04□□□□□ -1.6
HMGB1-208ENST00000490788 PRKD2Q9BZL6 878 aa5.04□□□□□ -1.6
HMGB1-208ENST00000490788 RNF40O75150 1001 aa5.03□□□□□ -1.6
HMGB1-208ENST00000490788 MAP2K5Q13163 448 aa5.03□□□□□ -1.6
HMGB1-208ENST00000490788 TTC13Q8NBP0 860 aa5.03□□□□□ -1.6
HMGB1-208ENST00000490788 ZC3H15Q8WU90 426 aaKnown RBP5.03□□□□□ -1.6
HMGB1-208ENST00000490788 IL21Q9HBE4 155 aa5.03□□□□□ -1.6
HMGB1-208ENST00000490788 MINK1Q8N4C8 1332 aaPredicted RBP5.02□□□□□ -1.61
HMGB1-208ENST00000490788 SAMD7Q7Z3H4 446 aa5.02□□□□□ -1.61
HMGB1-208ENST00000490788 NECTIN2Q92692 538 aa5.02□□□□□ -1.61
HMGB1-208ENST00000490788 KRTAP9-2Q9BYQ4 174 aa5.02□□□□□ -1.61
HMGB1-208ENST00000490788 FAM198AQ9UFP1 575 aa5.02□□□□□ -1.61
HMGB1-208ENST00000490788 ADGRG1Q9Y653 693 aa5.02□□□□□ -1.61
HMGB1-208ENST00000490788 POTECB2RU33 542 aa5.01□□□□□ -1.61
HMGB1-208ENST00000490788 GPR37O15354 613 aa5.01□□□□□ -1.61
HMGB1-208ENST00000490788 FECHP22830 423 aa5.01□□□□□ -1.61
HMGB1-208ENST00000490788 DNAJB2P25686 324 aa5.01□□□□□ -1.61
HMGB1-208ENST00000490788 FAM161AQ3B820 660 aa5.01□□□□□ -1.61
HMGB1-208ENST00000490788 RSPH4AQ5TD94 716 aa5.01□□□□□ -1.61
HMGB1-208ENST00000490788 KRTAP1-3Q8IUG1 177 aa5.01□□□□□ -1.61
HMGB1-208ENST00000490788 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5□□□□□ -1.61
HMGB1-208ENST00000490788 ZMYND10O75800 440 aa5□□□□□ -1.61
HMGB1-208ENST00000490788 XP32Q5T750 250 aa5□□□□□ -1.61
HMGB1-208ENST00000490788 PPP1R18Q6NYC8 613 aa5□□□□□ -1.61
HMGB1-208ENST00000490788 BARGINQ6ZT62 677 aa5□□□□□ -1.61
HMGB1-208ENST00000490788 SLF2Q8IX21 1173 aa5□□□□□ -1.61
HMGB1-208ENST00000490788 MTRQ99707 1265 aa5□□□□□ -1.61
HMGB1-208ENST00000490788 EIF4ENIF1Q9NRA8 985 aaKnown RBP5□□□□□ -1.61
HMGB1-208ENST00000490788 KRTAP9-6A0A140TA67 174 aa4.99□□□□□ -1.61
HMGB1-208ENST00000490788 RCCD1A6NED2 376 aa4.99□□□□□ -1.61
HMGB1-208ENST00000490788 IRF6O14896 467 aa4.99□□□□□ -1.61
HMGB1-208ENST00000490788 METTL3Q86U44 580 aaKnown RBP4.99□□□□□ -1.61
HMGB1-208ENST00000490788 PXYLP1Q8TE99 480 aa4.99□□□□□ -1.61
HMGB1-208ENST00000490788 CCDC102AQ96A19 550 aa4.99□□□□□ -1.61
HMGB1-208ENST00000490788 EYA1Q99502 592 aa4.99□□□□□ -1.61
HMGB1-208ENST00000490788 GGCXP38435 758 aa4.98□□□□□ -1.61
HMGB1-208ENST00000490788 MYT1Q01538 1121 aa4.98□□□□□ -1.61
HMGB1-208ENST00000490788 SWT1Q5T5J6 900 aaKnown RBP4.98□□□□□ -1.61
HMGB1-208ENST00000490788 TMUB1Q9BVT8 246 aa4.98□□□□□ -1.61
HMGB1-208ENST00000490788 C3orf80F5H4A9 247 aa4.97□□□□□ -1.61
HMGB1-208ENST00000490788 DGAT1O75907 488 aa4.97□□□□□ -1.61
HMGB1-208ENST00000490788 NFX1Q12986 1120 aaKnown RBP4.97□□□□□ -1.61
HMGB1-208ENST00000490788 TPRNQ4KMQ1 711 aa4.97□□□□□ -1.61
HMGB1-208ENST00000490788 ZNF516Q92618 1163 aa4.97□□□□□ -1.61
HMGB1-208ENST00000490788 AK7Q96M32 723 aa4.97□□□□□ -1.61
HMGB1-208ENST00000490788 TMEM134Q9H6X4 195 aa4.97□□□□□ -1.61
HMGB1-208ENST00000490788 CLCN1P35523 988 aa4.96□□□□□ -1.62
HMGB1-208ENST00000490788 APLP1P51693 650 aa4.96□□□□□ -1.62
HMGB1-208ENST00000490788 TTLL12Q14166 644 aaPredicted RBP4.96□□□□□ -1.62
HMGB1-208ENST00000490788 SULF1Q8IWU6 871 aa4.96□□□□□ -1.62
HMGB1-208ENST00000490788 RDH13Q8NBN7 331 aa4.96□□□□□ -1.62
HMGB1-208ENST00000490788 PRR14Q9BWN1 585 aa4.96□□□□□ -1.62
HMGB1-208ENST00000490788 DDX11L8A8MPP1 907 aa4.95□□□□□ -1.62
HMGB1-208ENST00000490788 MDM2Q00987 491 aaPredicted RBP4.95□□□□□ -1.62
HMGB1-208ENST00000490788 SLC24A3Q9HC58 644 aa4.95□□□□□ -1.62
HMGB1-208ENST00000490788 DAXXQ9UER7 740 aaPredicted RBP4.95□□□□□ -1.62
HMGB1-208ENST00000490788 KMT5BQ4FZB7 885 aa4.94□□□□□ -1.62
HMGB1-208ENST00000490788 PKDCCQ504Y2 493 aa4.94□□□□□ -1.62
HMGB1-208ENST00000490788 NLRP7Q8WX94 980 aa4.94□□□□□ -1.62
HMGB1-208ENST00000490788 PSMG3-AS1Q96PY0 264 aa4.94□□□□□ -1.62
HMGB1-208ENST00000490788 GPCPD1Q9NPB8 672 aa4.94□□□□□ -1.62
HMGB1-208ENST00000490788 NKX2-3Q8TAU0 364 aa4.93□□□□□ -1.62
HMGB1-208ENST00000490788 TRIM66O15016 1216 aa4.92□□□□□ -1.62
HMGB1-208ENST00000490788 ZPR1O75312 459 aa4.92□□□□□ -1.62
HMGB1-208ENST00000490788 CFHP08603 1231 aa4.92□□□□□ -1.62
HMGB1-208ENST00000490788 PHOX2BQ99453 314 aa4.92□□□□□ -1.62
HMGB1-208ENST00000490788 AMHR2Q16671 573 aa4.91□□□□□ -1.62
HMGB1-208ENST00000490788 COPS2P61201 443 aa4.9□□□□□ -1.63
HMGB1-208ENST00000490788 PDE4DQ08499 809 aa4.9□□□□□ -1.63
HMGB1-208ENST00000490788 GRIPAP1Q4V328 841 aa4.9□□□□□ -1.63
HMGB1-208ENST00000490788 SSTR3P32745 418 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-208ENST00000490788 SLC19A1P41440 591 aa4.89□□□□□ -1.63
HMGB1-208ENST00000490788 PRR20EP86478 221 aa4.89□□□□□ -1.63
HMGB1-208ENST00000490788 PRR20CP86479 221 aa4.89□□□□□ -1.63
HMGB1-208ENST00000490788 PRR20DP86480 221 aa4.89□□□□□ -1.63
HMGB1-208ENST00000490788 PRR20BP86481 221 aa4.89□□□□□ -1.63
HMGB1-208ENST00000490788 PRR20AP86496 221 aa4.89□□□□□ -1.63
HMGB1-208ENST00000490788 GIGYF2Q6Y7W6 1299 aaKnown RBP4.89□□□□□ -1.63
HMGB1-208ENST00000490788 NUTM1Q86Y26 1132 aa4.89□□□□□ -1.63
HMGB1-208ENST00000490788 PCDHB3Q9Y5E6 796 aa4.89□□□□□ -1.63
HMGB1-208ENST00000490788 RNF223E7ERA6 249 aa4.88□□□□□ -1.63
HMGB1-208ENST00000490788 SLC10A3P09131 477 aa4.88□□□□□ -1.63
HMGB1-208ENST00000490788 TRIM67Q6ZTA4 783 aa4.88□□□□□ -1.63
HMGB1-208ENST00000490788 ZNF598Q86UK7 904 aaKnown RBP4.88□□□□□ -1.63
HMGB1-208ENST00000490788 PARP9Q8IXQ6 854 aa4.88□□□□□ -1.63
HMGB1-208ENST00000490788 FAM217BQ9NTX9 383 aaPredicted RBP4.88□□□□□ -1.63
HMGB1-208ENST00000490788 ACTN4O43707 911 aaKnown RBP4.87□□□□□ -1.63
HMGB1-208ENST00000490788 NR1I2O75469 434 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms