RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.49□□□□□ -1.05
CPSF3-205ENST00000489629 OATP04181 439 aa8.49□□□□□ -1.05
CPSF3-205ENST00000489629 METTL3Q86U44 580 aaKnown RBP8.48□□□□□ -1.05
CPSF3-205ENST00000489629 GPIHBP1Q8IV16 184 aa8.48□□□□□ -1.05
CPSF3-205ENST00000489629 IL21Q9HBE4 155 aa8.48□□□□□ -1.05
CPSF3-205ENST00000489629 SLC4A3P48751 1232 aa8.47□□□□□ -1.05
CPSF3-205ENST00000489629 ZNF516Q92618 1163 aa8.46□□□□□ -1.06
CPSF3-205ENST00000489629 SLC10A3P09131 477 aa8.45□□□□□ -1.06
CPSF3-205ENST00000489629 PRR14Q9BWN1 585 aa8.43□□□□□ -1.06
CPSF3-205ENST00000489629 ACTN4O43707 911 aaKnown RBP8.42□□□□□ -1.06
CPSF3-205ENST00000489629 PHOX2BQ99453 314 aa8.42□□□□□ -1.06
CPSF3-205ENST00000489629 COPS2P61201 443 aa8.41□□□□□ -1.06
CPSF3-205ENST00000489629 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.41□□□□□ -1.06
CPSF3-205ENST00000489629 NKX2-3Q8TAU0 364 aa8.41□□□□□ -1.06
CPSF3-205ENST00000489629 PCDHB3Q9Y5E6 796 aa8.41□□□□□ -1.06
CPSF3-205ENST00000489629 TULP1O00294 542 aaPredicted RBP8.4□□□□□ -1.06
CPSF3-205ENST00000489629 CFHP08603 1231 aa8.4□□□□□ -1.06
CPSF3-205ENST00000489629 NLRP7Q8WX94 980 aa8.4□□□□□ -1.06
CPSF3-205ENST00000489629 DAXXQ9UER7 740 aaPredicted RBP8.4□□□□□ -1.06
CPSF3-205ENST00000489629 ZPR1O75312 459 aa8.39□□□□□ -1.07
CPSF3-205ENST00000489629 KMT5BQ4FZB7 885 aa8.39□□□□□ -1.07
CPSF3-205ENST00000489629 BLOC1S3Q6QNY0 202 aa8.39□□□□□ -1.07
CPSF3-205ENST00000489629 MAP2K5Q13163 448 aa8.38□□□□□ -1.07
CPSF3-205ENST00000489629 PPP1R18Q6NYC8 613 aa8.38□□□□□ -1.07
CPSF3-205ENST00000489629 IRF6O14896 467 aa8.36□□□□□ -1.07
CPSF3-205ENST00000489629 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.36□□□□□ -1.07
CPSF3-205ENST00000489629 MINK1Q8N4C8 1332 aaPredicted RBP8.34□□□□□ -1.07
CPSF3-205ENST00000489629 RSPH4AQ5TD94 716 aa8.34□□□□□ -1.07
CPSF3-205ENST00000489629 DDX11L8A8MPP1 907 aa8.33□□□□□ -1.08
CPSF3-205ENST00000489629 LMOD2Q6P5Q4 547 aa8.33□□□□□ -1.08
CPSF3-205ENST00000489629 TLL1O43897 1013 aa8.32□□□□□ -1.08
CPSF3-205ENST00000489629 RDH13Q8NBN7 331 aa8.32□□□□□ -1.08
CPSF3-205ENST00000489629 TMUB1Q9BVT8 246 aa8.32□□□□□ -1.08
CPSF3-205ENST00000489629 IRX2Q9BZI1 471 aaPredicted RBP8.32□□□□□ -1.08
CPSF3-205ENST00000489629 GCGRP47871 477 aa8.31□□□□□ -1.08
CPSF3-205ENST00000489629 PUS10Q3MIT2 529 aaKnown RBP8.31□□□□□ -1.08
CPSF3-205ENST00000489629 SULF1Q8IWU6 871 aa8.31□□□□□ -1.08
CPSF3-205ENST00000489629 NR1I2O75469 434 aa8.3□□□□□ -1.08
CPSF3-205ENST00000489629 CCDC102AQ96A19 550 aa8.3□□□□□ -1.08
CPSF3-205ENST00000489629 GGCXP38435 758 aa8.29□□□□□ -1.08
CPSF3-205ENST00000489629 MORN1Q5T089 497 aa8.29□□□□□ -1.08
CPSF3-205ENST00000489629 SCUBE3Q8IX30 993 aa8.29□□□□□ -1.08
CPSF3-205ENST00000489629 PRKD2Q9BZL6 878 aa8.29□□□□□ -1.08
CPSF3-205ENST00000489629 ADH1BP00325 375 aa8.28□□□□□ -1.08
CPSF3-205ENST00000489629 CD46P15529 392 aa8.28□□□□□ -1.08
CPSF3-205ENST00000489629 FUT2Q10981 343 aa8.28□□□□□ -1.08
CPSF3-205ENST00000489629 V9GY48 417 aaPredicted RBP8.28□□□□□ -1.08
CPSF3-205ENST00000489629 RNF223E7ERA6 249 aa8.27□□□□□ -1.09
CPSF3-205ENST00000489629 ZMYND10O75800 440 aa8.27□□□□□ -1.09
CPSF3-205ENST00000489629 ATP6V1AP38606 617 aa8.27□□□□□ -1.09
CPSF3-205ENST00000489629 BARGINQ6ZT62 677 aa8.27□□□□□ -1.09
CPSF3-205ENST00000489629 S1PR4O95977 384 aa8.26□□□□□ -1.09
CPSF3-205ENST00000489629 MDM2Q00987 491 aaPredicted RBP8.26□□□□□ -1.09
CPSF3-205ENST00000489629 ZC3H15Q8WU90 426 aaKnown RBP8.26□□□□□ -1.09
CPSF3-205ENST00000489629 EMID1Q96A84 441 aaPredicted RBP8.26□□□□□ -1.09
CPSF3-205ENST00000489629 THAP11Q96EK4 314 aa8.26□□□□□ -1.09
CPSF3-205ENST00000489629 PPEF1O14829 653 aaPredicted RBP8.24□□□□□ -1.09
CPSF3-205ENST00000489629 ANKLE1Q8NAG6 615 aa8.24□□□□□ -1.09
CPSF3-205ENST00000489629 SLC27A5Q9Y2P5 690 aa8.24□□□□□ -1.09
CPSF3-205ENST00000489629 SPSB2Q99619 263 aa8.23□□□□□ -1.09
CPSF3-205ENST00000489629 SLC6A16Q9GZN6 736 aa8.23□□□□□ -1.09
CPSF3-205ENST00000489629 GPCPD1Q9NPB8 672 aa8.23□□□□□ -1.09
CPSF3-205ENST00000489629 CLCN1P35523 988 aa8.22□□□□□ -1.09
CPSF3-205ENST00000489629 REPIN1Q9BWE0 567 aaKnown RBP8.22□□□□□ -1.09
CPSF3-205ENST00000489629 FAM217BQ9NTX9 383 aaPredicted RBP8.22□□□□□ -1.09
CPSF3-205ENST00000489629 SALL2Q9Y467 1007 aaPredicted RBP8.22□□□□□ -1.09
CPSF3-205ENST00000489629 BRICD5Q6PL45 260 aa8.21□□□□□ -1.1
CPSF3-205ENST00000489629 KRI1Q8N9T8 703 aaKnown RBP8.21□□□□□ -1.1
CPSF3-205ENST00000489629 FMNL1O95466 1100 aaPredicted RBP8.2□□□□□ -1.1
CPSF3-205ENST00000489629 FAM160A2Q8N612 972 aaPredicted RBP8.2□□□□□ -1.1
CPSF3-205ENST00000489629 KDM4AO75164 1064 aa8.19□□□□□ -1.1
CPSF3-205ENST00000489629 SLC19A1P41440 591 aa8.19□□□□□ -1.1
CPSF3-205ENST00000489629 GRIPAP1Q4V328 841 aa8.19□□□□□ -1.1
CPSF3-205ENST00000489629 PLA2G2CQ5R387 149 aa8.19□□□□□ -1.1
CPSF3-205ENST00000489629 LIAT1Q6ZQX7 453 aa8.19□□□□□ -1.1
CPSF3-205ENST00000489629 GFRA3O60609 400 aa8.18□□□□□ -1.1
CPSF3-205ENST00000489629 LAPTM4AQ15012 233 aa8.18□□□□□ -1.1
CPSF3-205ENST00000489629 RNF19BQ6ZMZ0 732 aa8.18□□□□□ -1.1
CPSF3-205ENST00000489629 AMHR2Q16671 573 aa8.17□□□□□ -1.1
CPSF3-205ENST00000489629 SPRYD7Q5W111 196 aa8.17□□□□□ -1.1
CPSF3-205ENST00000489629 NRG2O14511 850 aaPredicted RBP8.16□□□□□ -1.1
CPSF3-205ENST00000489629 USP46P62068 366 aa8.16□□□□□ -1.1
CPSF3-205ENST00000489629 MSS51Q4VC12 460 aa8.16□□□□□ -1.1
CPSF3-205ENST00000489629 TRIM67Q6ZTA4 783 aa8.16□□□□□ -1.1
CPSF3-205ENST00000489629 HLA-CQ95604 372 aa8.16□□□□□ -1.1
CPSF3-205ENST00000489629 LCE2BO14633 110 aa8.15□□□□□ -1.1
CPSF3-205ENST00000489629 HOXA2O43364 376 aa8.15□□□□□ -1.1
CPSF3-205ENST00000489629 SSTR3P32745 418 aaPredicted RBP8.15□□□□□ -1.1
CPSF3-205ENST00000489629 Q6ZNB5 142 aa8.15□□□□□ -1.1
CPSF3-205ENST00000489629 ZNF598Q86UK7 904 aaKnown RBP8.15□□□□□ -1.1
CPSF3-205ENST00000489629 PRDM9Q9NQV7 894 aa8.15□□□□□ -1.1
CPSF3-205ENST00000489629 Q3C1V9 767 aa8.14□□□□□ -1.11
CPSF3-205ENST00000489629 TRIM66O15016 1216 aa8.13□□□□□ -1.11
CPSF3-205ENST00000489629 PDZRN3Q9UPQ7 1066 aa8.13□□□□□ -1.11
CPSF3-205ENST00000489629 GUCA2AQ02747 115 aa8.12□□□□□ -1.11
CPSF3-205ENST00000489629 FCF1Q9Y324 198 aaKnown RBP8.12□□□□□ -1.11
CPSF3-205ENST00000489629 MMP16P51512 607 aa8.11□□□□□ -1.11
CPSF3-205ENST00000489629 PRR20EP86478 221 aa8.11□□□□□ -1.11
CPSF3-205ENST00000489629 PRR20CP86479 221 aa8.11□□□□□ -1.11
CPSF3-205ENST00000489629 PRR20DP86480 221 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms