RNA–Protein interactions for RNA: ENST00000475401.1

TM9SF3-204, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 2

Gene TM9SF3, Length 511 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-204ENST00000475401 NLRP7Q8WX94 980 aa12.32□□□□□ -0.44
TM9SF3-204ENST00000475401 ZFRQ96KR1 1074 aaKnown RBP12.32□□□□□ -0.44
TM9SF3-204ENST00000475401 GIGYF2Q6Y7W6 1299 aaKnown RBP12.31□□□□□ -0.44
TM9SF3-204ENST00000475401 SULF1Q8IWU6 871 aa12.31□□□□□ -0.44
TM9SF3-204ENST00000475401 ANKK1Q8NFD2 765 aa12.3□□□□□ -0.44
TM9SF3-204ENST00000475401 KDM4CQ9H3R0 1056 aa12.3□□□□□ -0.44
TM9SF3-204ENST00000475401 GPBP1L1Q9HC44 474 aaPredicted RBP12.29□□□□□ -0.44
TM9SF3-204ENST00000475401 SWT1Q5T5J6 900 aaKnown RBP12.28□□□□□ -0.44
TM9SF3-204ENST00000475401 SLF2Q8IX21 1173 aa12.28□□□□□ -0.44
TM9SF3-204ENST00000475401 LRCH3Q96II8 777 aa12.28□□□□□ -0.44
TM9SF3-204ENST00000475401 RNF40O75150 1001 aa12.27□□□□□ -0.45
TM9SF3-204ENST00000475401 SAMD7Q7Z3H4 446 aa12.27□□□□□ -0.45
TM9SF3-204ENST00000475401 NECTIN2Q92692 538 aa12.27□□□□□ -0.45
TM9SF3-204ENST00000475401 SSTR3P32745 418 aaPredicted RBP12.26□□□□□ -0.45
TM9SF3-204ENST00000475401 WNT2BQ93097 391 aa12.26□□□□□ -0.45
TM9SF3-204ENST00000475401 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.26□□□□□ -0.45
TM9SF3-204ENST00000475401 DDX11L8A8MPP1 907 aa12.25□□□□□ -0.45
TM9SF3-204ENST00000475401 TMUB1Q9BVT8 246 aa12.25□□□□□ -0.45
TM9SF3-204ENST00000475401 FAM217BQ9NTX9 383 aaPredicted RBP12.25□□□□□ -0.45
TM9SF3-204ENST00000475401 RDH13Q8NBN7 331 aa12.24□□□□□ -0.45
TM9SF3-204ENST00000475401 DDRGK1Q96HY6 314 aa12.23□□□□□ -0.45
TM9SF3-204ENST00000475401 REPIN1Q9BWE0 567 aaKnown RBP12.23□□□□□ -0.45
TM9SF3-204ENST00000475401 SOWAHBA6NEL2 793 aa12.19□□□□□ -0.46
TM9SF3-204ENST00000475401 KCTD12Q96CX2 325 aaKnown RBP12.19□□□□□ -0.46
TM9SF3-204ENST00000475401 MYT1LQ9UL68 1186 aa12.19□□□□□ -0.46
TM9SF3-204ENST00000475401 MS4A1P11836 297 aa12.18□□□□□ -0.46
TM9SF3-204ENST00000475401 BEGAINQ9BUH8 593 aa12.18□□□□□ -0.46
TM9SF3-204ENST00000475401 PPP4CP60510 307 aa12.17□□□□□ -0.46
TM9SF3-204ENST00000475401 CD46P15529 392 aa12.16□□□□□ -0.46
TM9SF3-204ENST00000475401 BCAMP50895 628 aa12.16□□□□□ -0.46
TM9SF3-204ENST00000475401 DIXDC1Q155Q3 683 aa12.16□□□□□ -0.46
TM9SF3-204ENST00000475401 IL27Q8NEV9 243 aa12.16□□□□□ -0.46
TM9SF3-204ENST00000475401 TSR3Q9UJK0 312 aaKnown RBP12.16□□□□□ -0.46
TM9SF3-204ENST00000475401 HPS5Q9UPZ3 1129 aa12.16□□□□□ -0.46
TM9SF3-204ENST00000475401 KMT5BQ4FZB7 885 aa12.15□□□□□ -0.46
TM9SF3-204ENST00000475401 NUTM1Q86Y26 1132 aa12.15□□□□□ -0.46
TM9SF3-204ENST00000475401 PRR14Q9BWN1 585 aa12.15□□□□□ -0.46
TM9SF3-204ENST00000475401 FAM117AQ9C073 453 aa12.15□□□□□ -0.46
TM9SF3-204ENST00000475401 THSD4Q6ZMP0 1018 aa12.13□□□□□ -0.47
TM9SF3-204ENST00000475401 RSPH6AQ9H0K4 717 aa12.13□□□□□ -0.47
TM9SF3-204ENST00000475401 CFHP08603 1231 aa12.12□□□□□ -0.47
TM9SF3-204ENST00000475401 SLC10A3P09131 477 aa12.12□□□□□ -0.47
TM9SF3-204ENST00000475401 GCGRP47871 477 aa12.11□□□□□ -0.47
TM9SF3-204ENST00000475401 SPNS2Q8IVW8 549 aa12.11□□□□□ -0.47
TM9SF3-204ENST00000475401 TMEM132AQ24JP5 1023 aa12.1□□□□□ -0.47
TM9SF3-204ENST00000475401 KDM4AO75164 1064 aa12.09□□□□□ -0.47
TM9SF3-204ENST00000475401 GRIPAP1Q4V328 841 aa12.09□□□□□ -0.47
TM9SF3-204ENST00000475401 PTPN5P54829 565 aa12.08□□□□□ -0.48
TM9SF3-204ENST00000475401 USP46P62068 366 aa12.08□□□□□ -0.48
TM9SF3-204ENST00000475401 NYAP1Q6ZVC0 841 aa12.08□□□□□ -0.48
TM9SF3-204ENST00000475401 RNF166Q96A37 237 aaPredicted RBP12.08□□□□□ -0.48
TM9SF3-204ENST00000475401 ATP1B4Q9UN42 357 aaPredicted RBP12.08□□□□□ -0.48
TM9SF3-204ENST00000475401 WBP1LQ9NX94 342 aa12.07□□□□□ -0.48
TM9SF3-204ENST00000475401 TBC1D2Q9BYX2 928 aa12.06□□□□□ -0.48
TM9SF3-204ENST00000475401 PLEKHG3A1L390 1219 aa12.05□□□□□ -0.48
TM9SF3-204ENST00000475401 SPIRE2Q8WWL2 714 aa12.04□□□□□ -0.48
TM9SF3-204ENST00000475401 ACTN4O43707 911 aaKnown RBP12.02□□□□□ -0.49
TM9SF3-204ENST00000475401 ATP6V1AP38606 617 aa12.02□□□□□ -0.49
TM9SF3-204ENST00000475401 HCSTQ9UBK5 93 aa12.02□□□□□ -0.49
TM9SF3-204ENST00000475401 APLP1P51693 650 aa12.01□□□□□ -0.49
TM9SF3-204ENST00000475401 FUT2Q10981 343 aa12.01□□□□□ -0.49
TM9SF3-204ENST00000475401 SH3D19Q5HYK7 790 aa12.01□□□□□ -0.49
TM9SF3-204ENST00000475401 PCMTD1Q96MG8 357 aaPredicted RBP12.01□□□□□ -0.49
TM9SF3-204ENST00000475401 GOPCQ9HD26 462 aa12.01□□□□□ -0.49
TM9SF3-204ENST00000475401 PCDHB3Q9Y5E6 796 aa12□□□□□ -0.49
TM9SF3-204ENST00000475401 HOXA2O43364 376 aa11.99□□□□□ -0.49
TM9SF3-204ENST00000475401 SKIV2LQ15477 1246 aaKnown RBP11.99□□□□□ -0.49
TM9SF3-204ENST00000475401 MYSM1Q5VVJ2 828 aa11.99□□□□□ -0.49
TM9SF3-204ENST00000475401 POLR3EQ9NVU0 708 aa11.99□□□□□ -0.49
TM9SF3-204ENST00000475401 RIC3Q7Z5B4 369 aa11.98□□□□□ -0.49
TM9SF3-204ENST00000475401 CLK2P49760 499 aaKnown RBP11.97□□□□□ -0.49
TM9SF3-204ENST00000475401 MOXD2PA6NHM9 499 aa11.96□□□□□ -0.49
TM9SF3-204ENST00000475401 GJA5P36382 358 aa11.96□□□□□ -0.49
TM9SF3-204ENST00000475401 NR1I2O75469 434 aa11.95□□□□□ -0.5
TM9SF3-204ENST00000475401 FDX1P10109 184 aa11.95□□□□□ -0.5
TM9SF3-204ENST00000475401 MMRN1Q13201 1228 aa11.95□□□□□ -0.5
TM9SF3-204ENST00000475401 RSBN1LQ6PCB5 846 aaPredicted RBP11.94□□□□□ -0.5
TM9SF3-204ENST00000475401 SPTLC1O15269 473 aa11.93□□□□□ -0.5
TM9SF3-204ENST00000475401 NDUFV2P19404 249 aa11.93□□□□□ -0.5
TM9SF3-204ENST00000475401 Q3C1V9 767 aa11.93□□□□□ -0.5
TM9SF3-204ENST00000475401 PUS10Q3MIT2 529 aaKnown RBP11.93□□□□□ -0.5
TM9SF3-204ENST00000475401 MORN1Q5T089 497 aa11.92□□□□□ -0.5
TM9SF3-204ENST00000475401 COPS2P61201 443 aa11.9□□□□□ -0.5
TM9SF3-204ENST00000475401 CSPP1Q1MSJ5 1256 aa11.9□□□□□ -0.5
TM9SF3-204ENST00000475401 TUSC1Q2TAM9 212 aa11.9□□□□□ -0.5
TM9SF3-204ENST00000475401 BLOC1S3Q6QNY0 202 aa11.9□□□□□ -0.5
TM9SF3-204ENST00000475401 NUTM2BA6NNL0 878 aaPredicted RBP11.89□□□□□ -0.51
TM9SF3-204ENST00000475401 NUTM2EB1AL46 878 aaPredicted RBP11.89□□□□□ -0.51
TM9SF3-204ENST00000475401 NUTM2DQ5VT03 806 aaPredicted RBP11.89□□□□□ -0.51
TM9SF3-204ENST00000475401 NUTM2AQ8IVF1 878 aaPredicted RBP11.89□□□□□ -0.51
TM9SF3-204ENST00000475401 LIMD1Q9UGP4 676 aa11.89□□□□□ -0.51
TM9SF3-204ENST00000475401 SLC27A5Q9Y2P5 690 aa11.89□□□□□ -0.51
TM9SF3-204ENST00000475401 C6orf229H3BNL8 230 aa11.88□□□□□ -0.51
TM9SF3-204ENST00000475401 GUCA2AQ02747 115 aa11.88□□□□□ -0.51
TM9SF3-204ENST00000475401 SCUBE3Q8IX30 993 aa11.88□□□□□ -0.51
TM9SF3-204ENST00000475401 HLA-CQ95604 372 aa11.88□□□□□ -0.51
TM9SF3-204ENST00000475401 ZBTB3Q9H5J0 574 aa11.88□□□□□ -0.51
TM9SF3-204ENST00000475401 PRPF38BQ5VTL8 546 aaKnown RBP11.87□□□□□ -0.51
TM9SF3-204ENST00000475401 PROCA1Q8NCQ7 364 aaPredicted RBP11.87□□□□□ -0.51
TM9SF3-204ENST00000475401 MTRQ99707 1265 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms