RNA–Protein interactions for RNA: ENST00000471978.5

C9orf3-213, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-213ENST00000471978 MYO5BQ9ULV0 1848 aa34.33■■■■□ 3.09
C9orf3-213ENST00000471978 KCNA6P17658 529 aa34.33■■■■□ 3.09
C9orf3-213ENST00000471978 CHGAP10645 457 aaKnown RBP34.32■■■■□ 3.08
C9orf3-213ENST00000471978 HDGFP51858 240 aaKnown RBP34.32■■■■□ 3.08
C9orf3-213ENST00000471978 RIMS2Q9UQ26 1411 aa34.31■■■■□ 3.08
C9orf3-213ENST00000471978 RRBP1Q9P2E9 1410 aaKnown RBP34.3■■■■□ 3.08
C9orf3-213ENST00000471978 XIRP1Q702N8 1843 aaKnown RBP34.3■■■■□ 3.08
C9orf3-213ENST00000471978 PPP1R15AO75807 674 aaPredicted RBP34.3■■■■□ 3.08
C9orf3-213ENST00000471978 SENP3Q9H4L4 574 aaPredicted RBP34.3■■■■□ 3.08
C9orf3-213ENST00000471978 PLEKHG1Q9ULL1 1385 aa34.27■■■■□ 3.08
C9orf3-213ENST00000471978 TMEM94Q12767 1356 aa34.26■■■■□ 3.08
C9orf3-213ENST00000471978 PROSER2Q86WR7 435 aaPredicted RBP34.25■■■■□ 3.07
C9orf3-213ENST00000471978 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.24■■■■□ 3.07
C9orf3-213ENST00000471978 NWD1Q149M9 1564 aa34.2■■■■□ 3.07
C9orf3-213ENST00000471978 RBM33Q96EV2 1170 aaKnown RBP34.2■■■■□ 3.07
C9orf3-213ENST00000471978 NKTRP30414 1462 aaKnown RBP34.2■■■■□ 3.06
C9orf3-213ENST00000471978 NUTM2DQ5VT03 806 aaPredicted RBP34.18■■■■□ 3.06
C9orf3-213ENST00000471978 MED1Q15648 1581 aaPredicted RBP34.17■■■■□ 3.06
C9orf3-213ENST00000471978 TBX22Q9Y458 520 aa34.15■■■■□ 3.06
C9orf3-213ENST00000471978 NAIPQ13075 1403 aa34.14■■■■□ 3.06
C9orf3-213ENST00000471978 SOCS7O14512 581 aa34.14■■■■□ 3.06
C9orf3-213ENST00000471978 SPHKAPQ2M3C7 1700 aa34.11■■■■□ 3.05
C9orf3-213ENST00000471978 CHD2O14647 1828 aaKnown RBP34.11■■■■□ 3.05
C9orf3-213ENST00000471978 FAM135BQ49AJ0 1406 aa34.09■■■■□ 3.05
C9orf3-213ENST00000471978 ADAMTS13Q76LX8 1427 aa34.09■■■■□ 3.05
C9orf3-213ENST00000471978 MSH6P52701 1360 aa34.07■■■■□ 3.04
C9orf3-213ENST00000471978 DIP2AQ14689 1571 aa34.06■■■■□ 3.04
C9orf3-213ENST00000471978 ZNF326Q5BKZ1 582 aaKnown RBP34.02■■■■□ 3.04
C9orf3-213ENST00000471978 HFM1A2PYH4 1435 aa34.02■■■■□ 3.04
C9orf3-213ENST00000471978 PIK3R4Q99570 1358 aa34.01■■■■□ 3.04
C9orf3-213ENST00000471978 TRIM52Q96A61 297 aa34■■■■□ 3.03
C9orf3-213ENST00000471978 PHF23Q9BUL5 403 aaPredicted RBP33.99■■■■□ 3.03
C9orf3-213ENST00000471978 ROBO1Q9Y6N7 1651 aa33.99■■■■□ 3.03
C9orf3-213ENST00000471978 TRPM2O94759 1503 aa33.97■■■■□ 3.03
C9orf3-213ENST00000471978 CLTCL1P53675 1640 aa33.97■■■■□ 3.03
C9orf3-213ENST00000471978 SLAIN2Q9P270 581 aa33.96■■■■□ 3.03
C9orf3-213ENST00000471978 NCOA3Q9Y6Q9 1424 aa33.96■■■■□ 3.03
C9orf3-213ENST00000471978 C14orf37Q86TY3 774 aa33.95■■■■□ 3.03
C9orf3-213ENST00000471978 AMOTL2Q9Y2J4 779 aa33.93■■■■□ 3.02
C9orf3-213ENST00000471978 SETBP1Q9Y6X0 1596 aa33.9■■■■□ 3.02
C9orf3-213ENST00000471978 PTPRUQ92729 1446 aa33.9■■■■□ 3.02
C9orf3-213ENST00000471978 SLC4A1APQ9BWU0 796 aaKnown RBP33.9■■■■□ 3.02
C9orf3-213ENST00000471978 NRXN3Q9Y4C0 1643 aa33.9■■■■□ 3.02
C9orf3-213ENST00000471978 KIF1BO60333 1816 aa33.86■■■■□ 3.01
C9orf3-213ENST00000471978 NEXMIFQ5QGS0 1516 aa33.86■■■■□ 3.01
C9orf3-213ENST00000471978 C19orf44Q9H6X5 657 aa33.86■■■■□ 3.01
C9orf3-213ENST00000471978 ATF3P18847 181 aa33.83■■■■□ 3.01
C9orf3-213ENST00000471978 CADPS2Q86UW7 1296 aa33.83■■■■□ 3.01
C9orf3-213ENST00000471978 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.82■■■■□ 3
C9orf3-213ENST00000471978 METP08581 1390 aa33.81■■■■□ 3
C9orf3-213ENST00000471978 XRN1Q8IZH2 1706 aaKnown RBP33.79■■■■□ 3
C9orf3-213ENST00000471978 PHLPP1O60346 1717 aa33.78■■■■□ 3
C9orf3-213ENST00000471978 VGFO15240 615 aaPredicted RBP33.74■■■□□ 2.99
C9orf3-213ENST00000471978 FOXD1Q16676 465 aa33.73■■■□□ 2.99
C9orf3-213ENST00000471978 RGS17Q9UGC6 210 aaPredicted RBP33.72■■■□□ 2.99
C9orf3-213ENST00000471978 RPGRIP1LQ68CZ1 1315 aa33.71■■■□□ 2.99
C9orf3-213ENST00000471978 JCADQ9P266 1359 aa33.7■■■□□ 2.98
C9orf3-213ENST00000471978 DCCP43146 1447 aa33.7■■■□□ 2.98
C9orf3-213ENST00000471978 COL16A1Q07092 1604 aaPredicted RBP33.68■■■□□ 2.98
C9orf3-213ENST00000471978 MPHOSPH9Q99550 1183 aa33.65■■■□□ 2.98
C9orf3-213ENST00000471978 BRINP3Q76B58 766 aa33.64■■■□□ 2.98
C9orf3-213ENST00000471978 AHDC1Q5TGY3 1603 aaPredicted RBP33.64■■■□□ 2.98
C9orf3-213ENST00000471978 CCDC144AA2RUR9 1427 aa33.62■■■□□ 2.97
C9orf3-213ENST00000471978 PPLO60437 1756 aa33.61■■■□□ 2.97
C9orf3-213ENST00000471978 ADGRL3Q9HAR2 1447 aa33.61■■■□□ 2.97
C9orf3-213ENST00000471978 SETD1AO15047 1707 aaKnown RBP33.59■■■□□ 2.97
C9orf3-213ENST00000471978 MST1RQ04912 1400 aa33.59■■■□□ 2.97
C9orf3-213ENST00000471978 PTCH1Q13635 1447 aa33.55■■■□□ 2.96
C9orf3-213ENST00000471978 ASXL1Q8IXJ9 1541 aa33.55■■■□□ 2.96
C9orf3-213ENST00000471978 RGL3Q3MIN7 710 aa33.55■■■□□ 2.96
C9orf3-213ENST00000471978 NALCNQ8IZF0 1738 aa33.55■■■□□ 2.96
C9orf3-213ENST00000471978 POTEAQ6S8J7 498 aa33.54■■■□□ 2.96
C9orf3-213ENST00000471978 SPATA31A6Q5VVP1 1343 aa33.53■■■□□ 2.96
C9orf3-213ENST00000471978 ACIN1Q9UKV3 1341 aaKnown RBP33.53■■■□□ 2.96
C9orf3-213ENST00000471978 SETD5Q9C0A6 1442 aa33.53■■■□□ 2.96
C9orf3-213ENST00000471978 ROBO2Q9HCK4 1378 aa33.53■■■□□ 2.96
C9orf3-213ENST00000471978 SPATA31E1Q6ZUB1 1445 aa33.52■■■□□ 2.96
C9orf3-213ENST00000471978 ADGRF5Q8IZF2 1346 aa33.5■■■□□ 2.95
C9orf3-213ENST00000471978 SHPRHQ149N8 1683 aa33.48■■■□□ 2.95
C9orf3-213ENST00000471978 PRAG1Q86YV5 1406 aa33.48■■■□□ 2.95
C9orf3-213ENST00000471978 LRP6O75581 1613 aa33.47■■■□□ 2.95
C9orf3-213ENST00000471978 ANKRD30BQ9BXX2 1392 aa33.47■■■□□ 2.95
C9orf3-213ENST00000471978 MEX3CQ5U5Q3 659 aaKnown RBP33.45■■■□□ 2.95
C9orf3-213ENST00000471978 NHSL1Q5SYE7 1610 aa33.45■■■□□ 2.95
C9orf3-213ENST00000471978 C1orf167Q5SNV9 1468 aa33.43■■■□□ 2.94
C9orf3-213ENST00000471978 IFT172Q9UG01 1749 aa33.42■■■□□ 2.94
C9orf3-213ENST00000471978 DDX17Q92841 729 aaKnown RBP33.41■■■□□ 2.94
C9orf3-213ENST00000471978 RAB3GAP2Q9H2M9 1393 aa33.4■■■□□ 2.94
C9orf3-213ENST00000471978 LRRC59Q96AG4 307 aaKnown RBP33.4■■■□□ 2.94
C9orf3-213ENST00000471978 NUTM2BA6NNL0 878 aaPredicted RBP33.38■■■□□ 2.93
C9orf3-213ENST00000471978 NUTM2EB1AL46 878 aaPredicted RBP33.38■■■□□ 2.93
C9orf3-213ENST00000471978 NUTM2AQ8IVF1 878 aaPredicted RBP33.38■■■□□ 2.93
C9orf3-213ENST00000471978 STK26Q9P289 416 aa33.36■■■□□ 2.93
C9orf3-213ENST00000471978 PIK3C2GO75747 1445 aa33.35■■■□□ 2.93
C9orf3-213ENST00000471978 ORAI2Q96SN7 254 aa33.34■■■□□ 2.93
C9orf3-213ENST00000471978 LRPPRCP42704 1394 aaKnown RBP33.33■■■□□ 2.93
C9orf3-213ENST00000471978 ZNF772Q68DY9 489 aaPredicted RBP33.32■■■□□ 2.92
C9orf3-213ENST00000471978 TMEM132EQ6IEE7 984 aa33.32■■■□□ 2.92
C9orf3-213ENST00000471978 TECPR2O15040 1411 aa33.3■■■□□ 2.92
C9orf3-213ENST00000471978 WAPLQ7Z5K2 1190 aa33.29■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms