RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 GNPATO15228 680 aa9.31□□□□□ -0.92
PRPF40A-207ENST00000471701 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.3□□□□□ -0.92
PRPF40A-207ENST00000471701 TMEM134Q9H6X4 195 aa9.3□□□□□ -0.92
PRPF40A-207ENST00000471701 RSPH4AQ5TD94 716 aa9.28□□□□□ -0.92
PRPF40A-207ENST00000471701 GPIHBP1Q8IV16 184 aa9.27□□□□□ -0.93
PRPF40A-207ENST00000471701 PXYLP1Q8TE99 480 aa9.27□□□□□ -0.93
PRPF40A-207ENST00000471701 COPS2P61201 443 aa9.26□□□□□ -0.93
PRPF40A-207ENST00000471701 KMT5BQ4FZB7 885 aa9.26□□□□□ -0.93
PRPF40A-207ENST00000471701 ZNF516Q92618 1163 aa9.26□□□□□ -0.93
PRPF40A-207ENST00000471701 PCDHB3Q9Y5E6 796 aa9.26□□□□□ -0.93
PRPF40A-207ENST00000471701 FECHP22830 423 aa9.24□□□□□ -0.93
PRPF40A-207ENST00000471701 METTL3Q86U44 580 aaKnown RBP9.24□□□□□ -0.93
PRPF40A-207ENST00000471701 IRX2Q9BZI1 471 aaPredicted RBP9.23□□□□□ -0.93
PRPF40A-207ENST00000471701 ZPR1O75312 459 aa9.22□□□□□ -0.93
PRPF40A-207ENST00000471701 GGCXP38435 758 aa9.22□□□□□ -0.93
PRPF40A-207ENST00000471701 PPP1R18Q6NYC8 613 aa9.22□□□□□ -0.93
PRPF40A-207ENST00000471701 ACTN4O43707 911 aaKnown RBP9.21□□□□□ -0.94
PRPF40A-207ENST00000471701 CFHP08603 1231 aa9.21□□□□□ -0.94
PRPF40A-207ENST00000471701 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.21□□□□□ -0.94
PRPF40A-207ENST00000471701 DAXXQ9UER7 740 aaPredicted RBP9.21□□□□□ -0.94
PRPF40A-207ENST00000471701 GPR37O15354 613 aa9.2□□□□□ -0.94
PRPF40A-207ENST00000471701 NKX2-3Q8TAU0 364 aa9.2□□□□□ -0.94
PRPF40A-207ENST00000471701 SLC10A3P09131 477 aa9.19□□□□□ -0.94
PRPF40A-207ENST00000471701 BLOC1S3Q6QNY0 202 aa9.18□□□□□ -0.94
PRPF40A-207ENST00000471701 RDH13Q8NBN7 331 aa9.17□□□□□ -0.94
PRPF40A-207ENST00000471701 DDX11L8A8MPP1 907 aa9.16□□□□□ -0.94
PRPF40A-207ENST00000471701 NR1I2O75469 434 aa9.16□□□□□ -0.94
PRPF40A-207ENST00000471701 TMUB1Q9BVT8 246 aa9.16□□□□□ -0.94
PRPF40A-207ENST00000471701 PRKD2Q9BZL6 878 aa9.16□□□□□ -0.94
PRPF40A-207ENST00000471701 SULF1Q8IWU6 871 aa9.15□□□□□ -0.94
PRPF40A-207ENST00000471701 NLRP7Q8WX94 980 aa9.13□□□□□ -0.95
PRPF40A-207ENST00000471701 MINK1Q8N4C8 1332 aaPredicted RBP9.12□□□□□ -0.95
PRPF40A-207ENST00000471701 IRF6O14896 467 aa9.12□□□□□ -0.95
PRPF40A-207ENST00000471701 MAP2K5Q13163 448 aa9.12□□□□□ -0.95
PRPF40A-207ENST00000471701 SCUBE3Q8IX30 993 aa9.12□□□□□ -0.95
PRPF40A-207ENST00000471701 V9GY48 417 aaPredicted RBP9.12□□□□□ -0.95
PRPF40A-207ENST00000471701 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.11□□□□□ -0.95
PRPF40A-207ENST00000471701 PHOX2BQ99453 314 aa9.11□□□□□ -0.95
PRPF40A-207ENST00000471701 PUS10Q3MIT2 529 aaKnown RBP9.1□□□□□ -0.95
PRPF40A-207ENST00000471701 ATP6V1AP38606 617 aa9.09□□□□□ -0.95
PRPF40A-207ENST00000471701 LAPTM4AQ15012 233 aa9.09□□□□□ -0.95
PRPF40A-207ENST00000471701 TLL1O43897 1013 aa9.08□□□□□ -0.96
PRPF40A-207ENST00000471701 GFRA3O60609 400 aa9.08□□□□□ -0.96
PRPF40A-207ENST00000471701 GCGRP47871 477 aa9.08□□□□□ -0.96
PRPF40A-207ENST00000471701 GRIPAP1Q4V328 841 aa9.08□□□□□ -0.96
PRPF40A-207ENST00000471701 KRI1Q8N9T8 703 aaKnown RBP9.08□□□□□ -0.96
PRPF40A-207ENST00000471701 RNF223E7ERA6 249 aa9.07□□□□□ -0.96
PRPF40A-207ENST00000471701 ADH1BP00325 375 aa9.07□□□□□ -0.96
PRPF40A-207ENST00000471701 S1PR4O95977 384 aa9.06□□□□□ -0.96
PRPF40A-207ENST00000471701 FUT2Q10981 343 aa9.06□□□□□ -0.96
PRPF40A-207ENST00000471701 Q6ZNB5 142 aa9.06□□□□□ -0.96
PRPF40A-207ENST00000471701 SPSB2Q99619 263 aa9.06□□□□□ -0.96
PRPF40A-207ENST00000471701 SLC6A16Q9GZN6 736 aa9.06□□□□□ -0.96
PRPF40A-207ENST00000471701 LMOD2Q6P5Q4 547 aa9.05□□□□□ -0.96
PRPF40A-207ENST00000471701 PPEF1O14829 653 aaPredicted RBP9.04□□□□□ -0.96
PRPF40A-207ENST00000471701 SLC19A1P41440 591 aa9.04□□□□□ -0.96
PRPF40A-207ENST00000471701 MDM2Q00987 491 aaPredicted RBP9.04□□□□□ -0.96
PRPF40A-207ENST00000471701 MORN1Q5T089 497 aa9.04□□□□□ -0.96
PRPF40A-207ENST00000471701 ANKLE1Q8NAG6 615 aa9.04□□□□□ -0.96
PRPF40A-207ENST00000471701 CCDC102AQ96A19 550 aa9.03□□□□□ -0.96
PRPF40A-207ENST00000471701 FMNL1O95466 1100 aaPredicted RBP9.02□□□□□ -0.97
PRPF40A-207ENST00000471701 SLC27A5Q9Y2P5 690 aa9.01□□□□□ -0.97
PRPF40A-207ENST00000471701 CD46P15529 392 aa9□□□□□ -0.97
PRPF40A-207ENST00000471701 CLCN1P35523 988 aa9□□□□□ -0.97
PRPF40A-207ENST00000471701 PDZRN3Q9UPQ7 1066 aa9□□□□□ -0.97
PRPF40A-207ENST00000471701 SALL2Q9Y467 1007 aaPredicted RBP9□□□□□ -0.97
PRPF40A-207ENST00000471701 NRG2O14511 850 aaPredicted RBP8.99□□□□□ -0.97
PRPF40A-207ENST00000471701 KDM4AO75164 1064 aa8.99□□□□□ -0.97
PRPF40A-207ENST00000471701 GPCPD1Q9NPB8 672 aa8.99□□□□□ -0.97
PRPF40A-207ENST00000471701 Q3C1V9 767 aa8.98□□□□□ -0.97
PRPF40A-207ENST00000471701 SPRYD7Q5W111 196 aa8.98□□□□□ -0.97
PRPF40A-207ENST00000471701 BRICD5Q6PL45 260 aa8.97□□□□□ -0.97
PRPF40A-207ENST00000471701 BARGINQ6ZT62 677 aa8.97□□□□□ -0.97
PRPF40A-207ENST00000471701 ZNF598Q86UK7 904 aaKnown RBP8.97□□□□□ -0.97
PRPF40A-207ENST00000471701 THAP11Q96EK4 314 aa8.97□□□□□ -0.97
PRPF40A-207ENST00000471701 ZMYND10O75800 440 aa8.96□□□□□ -0.98
PRPF40A-207ENST00000471701 USP46P62068 366 aa8.96□□□□□ -0.98
PRPF40A-207ENST00000471701 TRAF7Q6Q0C0 670 aa8.96□□□□□ -0.98
PRPF40A-207ENST00000471701 LIAT1Q6ZQX7 453 aa8.96□□□□□ -0.98
PRPF40A-207ENST00000471701 ZC3H15Q8WU90 426 aaKnown RBP8.96□□□□□ -0.98
PRPF40A-207ENST00000471701 NUTM1Q86Y26 1132 aa8.95□□□□□ -0.98
PRPF40A-207ENST00000471701 FAM160A2Q8N612 972 aaPredicted RBP8.95□□□□□ -0.98
PRPF40A-207ENST00000471701 FAM217BQ9NTX9 383 aaPredicted RBP8.94□□□□□ -0.98
PRPF40A-207ENST00000471701 CD2BP2O95400 341 aaKnown RBP8.93□□□□□ -0.98
PRPF40A-207ENST00000471701 ZNF697Q5TEC3 545 aa8.93□□□□□ -0.98
PRPF40A-207ENST00000471701 EMID1Q96A84 441 aaPredicted RBP8.93□□□□□ -0.98
PRPF40A-207ENST00000471701 ZBTB24O43167 697 aaPredicted RBP8.92□□□□□ -0.98
PRPF40A-207ENST00000471701 SSTR3P32745 418 aaPredicted RBP8.92□□□□□ -0.98
PRPF40A-207ENST00000471701 RNF19BQ6ZMZ0 732 aa8.92□□□□□ -0.98
PRPF40A-207ENST00000471701 FCF1Q9Y324 198 aaKnown RBP8.92□□□□□ -0.98
PRPF40A-207ENST00000471701 TTLL12Q14166 644 aaPredicted RBP8.91□□□□□ -0.98
PRPF40A-207ENST00000471701 MSS51Q4VC12 460 aa8.91□□□□□ -0.98
PRPF40A-207ENST00000471701 PLA2G2CQ5R387 149 aa8.91□□□□□ -0.98
PRPF40A-207ENST00000471701 RPIAP49247 311 aa8.9□□□□□ -0.98
PRPF40A-207ENST00000471701 USB1Q9BQ65 265 aaKnown RBP8.9□□□□□ -0.98
PRPF40A-207ENST00000471701 HOXA2O43364 376 aa8.88□□□□□ -0.99
PRPF40A-207ENST00000471701 PRR20EP86478 221 aa8.88□□□□□ -0.99
PRPF40A-207ENST00000471701 PRR20CP86479 221 aa8.88□□□□□ -0.99
PRPF40A-207ENST00000471701 PRR20DP86480 221 aa8.88□□□□□ -0.99
PRPF40A-207ENST00000471701 PRR20BP86481 221 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms