RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 TREML4Q6UXN2 200 aa7.19□□□□□ -1.26
SF3B1-207ENST00000468925 SAMD7Q7Z3H4 446 aa7.19□□□□□ -1.26
SF3B1-207ENST00000468925 V9GY48 417 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-207ENST00000468925 KCNV2Q8TDN2 545 aa7.18□□□□□ -1.26
SF3B1-207ENST00000468925 ARIH1Q9Y4X5 557 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-207ENST00000468925 POTECB2RU33 542 aa7.17□□□□□ -1.26
SF3B1-207ENST00000468925 RANGAP1P46060 587 aaPredicted RBP7.17□□□□□ -1.26
SF3B1-207ENST00000468925 NUDT18Q6ZVK8 323 aa7.17□□□□□ -1.26
SF3B1-207ENST00000468925 TATDN2Q93075 761 aa7.17□□□□□ -1.26
SF3B1-207ENST00000468925 TSR3Q9UJK0 312 aaKnown RBP7.17□□□□□ -1.26
SF3B1-207ENST00000468925 NBPF26B4DH59 902 aa7.16□□□□□ -1.26
SF3B1-207ENST00000468925 PPP4CP60510 307 aa7.16□□□□□ -1.26
SF3B1-207ENST00000468925 PADI6Q6TGC4 694 aa7.16□□□□□ -1.26
SF3B1-207ENST00000468925 PDZRN3Q9UPQ7 1066 aa7.16□□□□□ -1.26
SF3B1-207ENST00000468925 TMEM132AQ24JP5 1023 aa7.15□□□□□ -1.26
SF3B1-207ENST00000468925 DIEXFQ68CQ4 756 aaKnown RBP7.15□□□□□ -1.26
SF3B1-207ENST00000468925 ABCC9O60706 1549 aa7.14□□□□□ -1.27
SF3B1-207ENST00000468925 CERKQ8TCT0 537 aa7.14□□□□□ -1.27
SF3B1-207ENST00000468925 FAM9AQ8IZU1 332 aaPredicted RBP7.13□□□□□ -1.27
SF3B1-207ENST00000468925 STK17AQ9UEE5 414 aa7.13□□□□□ -1.27
SF3B1-207ENST00000468925 NPDC1Q9NQX5 325 aaPredicted RBP7.12□□□□□ -1.27
SF3B1-207ENST00000468925 SUPT5HO00267 1087 aaKnown RBP7.11□□□□□ -1.27
SF3B1-207ENST00000468925 ARHGEF1Q92888 912 aaKnown RBP7.11□□□□□ -1.27
SF3B1-207ENST00000468925 NUTM2FA1L443 756 aa7.1□□□□□ -1.27
SF3B1-207ENST00000468925 FAM161AQ3B820 660 aa7.1□□□□□ -1.27
SF3B1-207ENST00000468925 SWT1Q5T5J6 900 aaKnown RBP7.1□□□□□ -1.27
SF3B1-207ENST00000468925 HDGFP51858 240 aaKnown RBP7.09□□□□□ -1.27
SF3B1-207ENST00000468925 SEMA3EO15041 775 aa7.08□□□□□ -1.28
SF3B1-207ENST00000468925 APLP1P51693 650 aa7.08□□□□□ -1.28
SF3B1-207ENST00000468925 PPP1R18Q6NYC8 613 aa7.08□□□□□ -1.28
SF3B1-207ENST00000468925 C14orf37Q86TY3 774 aa7.08□□□□□ -1.28
SF3B1-207ENST00000468925 MTRQ99707 1265 aa7.08□□□□□ -1.28
SF3B1-207ENST00000468925 COPS2P61201 443 aa7.07□□□□□ -1.28
SF3B1-207ENST00000468925 ZNF516Q92618 1163 aa7.07□□□□□ -1.28
SF3B1-207ENST00000468925 PODXL2Q9NZ53 605 aa7.07□□□□□ -1.28
SF3B1-207ENST00000468925 TJAP1Q5JTD0 557 aa7.06□□□□□ -1.28
SF3B1-207ENST00000468925 TTC13Q8NBP0 860 aa7.06□□□□□ -1.28
SF3B1-207ENST00000468925 RBM27Q9P2N5 1060 aaKnown RBP7.06□□□□□ -1.28
SF3B1-207ENST00000468925 ERICH6BQ5W0A0 696 aa7.05□□□□□ -1.28
SF3B1-207ENST00000468925 TRIM67Q6ZTA4 783 aa7.05□□□□□ -1.28
SF3B1-207ENST00000468925 PTGDRQ13258 359 aa7.04□□□□□ -1.28
SF3B1-207ENST00000468925 NKX2-3Q8TAU0 364 aa7.04□□□□□ -1.28
SF3B1-207ENST00000468925 WIPF1O43516 503 aa7.03□□□□□ -1.28
SF3B1-207ENST00000468925 P3H3Q8IVL6 736 aa7.03□□□□□ -1.28
SF3B1-207ENST00000468925 SLF2Q8IX21 1173 aa7.03□□□□□ -1.28
SF3B1-207ENST00000468925 EYA1Q99502 592 aa7.03□□□□□ -1.28
SF3B1-207ENST00000468925 IL21Q9HBE4 155 aa7.03□□□□□ -1.28
SF3B1-207ENST00000468925 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.02□□□□□ -1.29
SF3B1-207ENST00000468925 RBM26Q5T8P6 1007 aaKnown RBP7.01□□□□□ -1.29
SF3B1-207ENST00000468925 RBM46Q8TBY0 533 aaKnown RBP7□□□□□ -1.29
SF3B1-207ENST00000468925 ADGRG1Q9Y653 693 aa7□□□□□ -1.29
SF3B1-207ENST00000468925 RCCD1A6NED2 376 aa6.99□□□□□ -1.29
SF3B1-207ENST00000468925 DGAT1O75907 488 aa6.99□□□□□ -1.29
SF3B1-207ENST00000468925 WFS1O76024 890 aa6.99□□□□□ -1.29
SF3B1-207ENST00000468925 DNAJB2P25686 324 aa6.99□□□□□ -1.29
SF3B1-207ENST00000468925 SLC4A3P48751 1232 aa6.99□□□□□ -1.29
SF3B1-207ENST00000468925 PKDCCQ504Y2 493 aa6.99□□□□□ -1.29
SF3B1-207ENST00000468925 CCER1Q8TC90 406 aaPredicted RBP6.99□□□□□ -1.29
SF3B1-207ENST00000468925 TLL1O43897 1013 aa6.98□□□□□ -1.29
SF3B1-207ENST00000468925 FCHSD2O94868 740 aa6.98□□□□□ -1.29
SF3B1-207ENST00000468925 INSM1Q01101 510 aaPredicted RBP6.98□□□□□ -1.29
SF3B1-207ENST00000468925 SUZ12Q15022 739 aaKnown RBP6.98□□□□□ -1.29
SF3B1-207ENST00000468925 BLOC1S3Q6QNY0 202 aa6.98□□□□□ -1.29
SF3B1-207ENST00000468925 PCDHB3Q9Y5E6 796 aa6.98□□□□□ -1.29
SF3B1-207ENST00000468925 NLRP7Q8WX94 980 aa6.97□□□□□ -1.29
SF3B1-207ENST00000468925 CFHP08603 1231 aa6.96□□□□□ -1.3
SF3B1-207ENST00000468925 FECHP22830 423 aa6.96□□□□□ -1.3
SF3B1-207ENST00000468925 NFX1Q12986 1120 aaKnown RBP6.96□□□□□ -1.3
SF3B1-207ENST00000468925 TMEM134Q9H6X4 195 aa6.96□□□□□ -1.3
SF3B1-207ENST00000468925 TESPA1A2RU30 521 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-207ENST00000468925 ZPR1O75312 459 aa6.94□□□□□ -1.3
SF3B1-207ENST00000468925 LCE2CQ5TA81 110 aa6.94□□□□□ -1.3
SF3B1-207ENST00000468925 NECTIN2Q92692 538 aa6.94□□□□□ -1.3
SF3B1-207ENST00000468925 SLC10A3P09131 477 aa6.93□□□□□ -1.3
SF3B1-207ENST00000468925 PPEF1O14829 653 aaPredicted RBP6.92□□□□□ -1.3
SF3B1-207ENST00000468925 PRR20EP86478 221 aa6.92□□□□□ -1.3
SF3B1-207ENST00000468925 PRR20CP86479 221 aa6.92□□□□□ -1.3
SF3B1-207ENST00000468925 PRR20DP86480 221 aa6.92□□□□□ -1.3
SF3B1-207ENST00000468925 PRR20BP86481 221 aa6.92□□□□□ -1.3
SF3B1-207ENST00000468925 PRR20AP86496 221 aa6.92□□□□□ -1.3
SF3B1-207ENST00000468925 PUS10Q3MIT2 529 aaKnown RBP6.92□□□□□ -1.3
SF3B1-207ENST00000468925 KMT5BQ4FZB7 885 aa6.92□□□□□ -1.3
SF3B1-207ENST00000468925 UBE2Q2Q8WVN8 375 aa6.92□□□□□ -1.3
SF3B1-207ENST00000468925 SUPT16HQ9Y5B9 1047 aaKnown RBP6.92□□□□□ -1.3
SF3B1-207ENST00000468925 ZCCHC6Q5VYS8 1495 aaKnown RBP6.92□□□□□ -1.3
SF3B1-207ENST00000468925 LOC105371045A0A1W2PR82 267 aa6.91□□□□□ -1.3
SF3B1-207ENST00000468925 HIC1Q14526 733 aa6.91□□□□□ -1.3
SF3B1-207ENST00000468925 PXYLP1Q8TE99 480 aa6.91□□□□□ -1.3
SF3B1-207ENST00000468925 EMID1Q96A84 441 aaPredicted RBP6.91□□□□□ -1.3
SF3B1-207ENST00000468925 PRR14Q9BWN1 585 aa6.91□□□□□ -1.3
SF3B1-207ENST00000468925 AAASQ9NRG9 546 aa6.91□□□□□ -1.3
SF3B1-207ENST00000468925 SHROOM4Q9ULL8 1493 aa6.91□□□□□ -1.3
SF3B1-207ENST00000468925 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.9□□□□□ -1.3
SF3B1-207ENST00000468925 ST8SIA5O15466 376 aa6.9□□□□□ -1.3
SF3B1-207ENST00000468925 GGCXP38435 758 aa6.9□□□□□ -1.3
SF3B1-207ENST00000468925 METTL3Q86U44 580 aaKnown RBP6.9□□□□□ -1.3
SF3B1-207ENST00000468925 RDH13Q8NBN7 331 aa6.9□□□□□ -1.3
SF3B1-207ENST00000468925 GNPATO15228 680 aa6.89□□□□□ -1.31
SF3B1-207ENST00000468925 ACTN4O43707 911 aaKnown RBP6.89□□□□□ -1.31
SF3B1-207ENST00000468925 S1PR4O95977 384 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms