RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.95□□□□□ -0.18
SMC4-205ENST00000465563 GNPATO15228 680 aa13.95□□□□□ -0.18
SMC4-205ENST00000465563 PXYLP1Q8TE99 480 aa13.95□□□□□ -0.18
SMC4-205ENST00000465563 GPR37O15354 613 aa13.93□□□□□ -0.18
SMC4-205ENST00000465563 ZNF516Q92618 1163 aa13.93□□□□□ -0.18
SMC4-205ENST00000465563 FECHP22830 423 aa13.91□□□□□ -0.18
SMC4-205ENST00000465563 COPS2P61201 443 aa13.91□□□□□ -0.18
SMC4-205ENST00000465563 METTL3Q86U44 580 aaKnown RBP13.91□□□□□ -0.18
SMC4-205ENST00000465563 GPIHBP1Q8IV16 184 aa13.9□□□□□ -0.18
SMC4-205ENST00000465563 PCDHB3Q9Y5E6 796 aa13.89□□□□□ -0.19
SMC4-205ENST00000465563 TULP1O00294 542 aaPredicted RBP13.87□□□□□ -0.19
SMC4-205ENST00000465563 KMT5BQ4FZB7 885 aa13.87□□□□□ -0.19
SMC4-205ENST00000465563 IRX2Q9BZI1 471 aaPredicted RBP13.86□□□□□ -0.19
SMC4-205ENST00000465563 CFHP08603 1231 aa13.85□□□□□ -0.19
SMC4-205ENST00000465563 ZPR1O75312 459 aa13.84□□□□□ -0.19
SMC4-205ENST00000465563 SLC10A3P09131 477 aa13.84□□□□□ -0.19
SMC4-205ENST00000465563 PPP1R18Q6NYC8 613 aa13.84□□□□□ -0.19
SMC4-205ENST00000465563 NKX2-3Q8TAU0 364 aa13.84□□□□□ -0.19
SMC4-205ENST00000465563 ACTN4O43707 911 aaKnown RBP13.83□□□□□ -0.2
SMC4-205ENST00000465563 RSPH4AQ5TD94 716 aa13.83□□□□□ -0.2
SMC4-205ENST00000465563 BLOC1S3Q6QNY0 202 aa13.82□□□□□ -0.2
SMC4-205ENST00000465563 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.81□□□□□ -0.2
SMC4-205ENST00000465563 GGCXP38435 758 aa13.79□□□□□ -0.2
SMC4-205ENST00000465563 DAXXQ9UER7 740 aaPredicted RBP13.79□□□□□ -0.2
SMC4-205ENST00000465563 PRKD2Q9BZL6 878 aa13.75□□□□□ -0.21
SMC4-205ENST00000465563 NLRP7Q8WX94 980 aa13.74□□□□□ -0.21
SMC4-205ENST00000465563 PHOX2BQ99453 314 aa13.74□□□□□ -0.21
SMC4-205ENST00000465563 TMUB1Q9BVT8 246 aa13.74□□□□□ -0.21
SMC4-205ENST00000465563 RDH13Q8NBN7 331 aa13.73□□□□□ -0.21
SMC4-205ENST00000465563 DDX11L8A8MPP1 907 aa13.72□□□□□ -0.21
SMC4-205ENST00000465563 NR1I2O75469 434 aa13.72□□□□□ -0.21
SMC4-205ENST00000465563 V9GY48 417 aaPredicted RBP13.71□□□□□ -0.21
SMC4-205ENST00000465563 TLL1O43897 1013 aa13.7□□□□□ -0.22
SMC4-205ENST00000465563 MAP2K5Q13163 448 aa13.7□□□□□ -0.22
SMC4-205ENST00000465563 SULF1Q8IWU6 871 aa13.7□□□□□ -0.22
SMC4-205ENST00000465563 IRF6O14896 467 aa13.66□□□□□ -0.22
SMC4-205ENST00000465563 PUS10Q3MIT2 529 aaKnown RBP13.66□□□□□ -0.22
SMC4-205ENST00000465563 SCUBE3Q8IX30 993 aa13.66□□□□□ -0.22
SMC4-205ENST00000465563 RNF223E7ERA6 249 aa13.65□□□□□ -0.22
SMC4-205ENST00000465563 MINK1Q8N4C8 1332 aaPredicted RBP13.64□□□□□ -0.23
SMC4-205ENST00000465563 ADH1BP00325 375 aa13.64□□□□□ -0.23
SMC4-205ENST00000465563 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.64□□□□□ -0.23
SMC4-205ENST00000465563 GCGRP47871 477 aa13.63□□□□□ -0.23
SMC4-205ENST00000465563 LAPTM4AQ15012 233 aa13.63□□□□□ -0.23
SMC4-205ENST00000465563 S1PR4O95977 384 aa13.62□□□□□ -0.23
SMC4-205ENST00000465563 GFRA3O60609 400 aa13.61□□□□□ -0.23
SMC4-205ENST00000465563 ATP6V1AP38606 617 aa13.61□□□□□ -0.23
SMC4-205ENST00000465563 FUT2Q10981 343 aa13.61□□□□□ -0.23
SMC4-205ENST00000465563 MORN1Q5T089 497 aa13.6□□□□□ -0.23
SMC4-205ENST00000465563 Q6ZNB5 142 aa13.6□□□□□ -0.23
SMC4-205ENST00000465563 ANKLE1Q8NAG6 615 aa13.6□□□□□ -0.23
SMC4-205ENST00000465563 SPSB2Q99619 263 aa13.59□□□□□ -0.23
SMC4-205ENST00000465563 SLC6A16Q9GZN6 736 aa13.59□□□□□ -0.23
SMC4-205ENST00000465563 PPEF1O14829 653 aaPredicted RBP13.57□□□□□ -0.24
SMC4-205ENST00000465563 LMOD2Q6P5Q4 547 aa13.57□□□□□ -0.24
SMC4-205ENST00000465563 CCDC102AQ96A19 550 aa13.57□□□□□ -0.24
SMC4-205ENST00000465563 SLC19A1P41440 591 aa13.56□□□□□ -0.24
SMC4-205ENST00000465563 MDM2Q00987 491 aaPredicted RBP13.56□□□□□ -0.24
SMC4-205ENST00000465563 CD46P15529 392 aa13.54□□□□□ -0.24
SMC4-205ENST00000465563 GRIPAP1Q4V328 841 aa13.54□□□□□ -0.24
SMC4-205ENST00000465563 SLC27A5Q9Y2P5 690 aa13.54□□□□□ -0.24
SMC4-205ENST00000465563 NRG2O14511 850 aaPredicted RBP13.53□□□□□ -0.24
SMC4-205ENST00000465563 FMNL1O95466 1100 aaPredicted RBP13.52□□□□□ -0.25
SMC4-205ENST00000465563 EMID1Q96A84 441 aaPredicted RBP13.52□□□□□ -0.25
SMC4-205ENST00000465563 THAP11Q96EK4 314 aa13.52□□□□□ -0.25
SMC4-205ENST00000465563 PDZRN3Q9UPQ7 1066 aa13.51□□□□□ -0.25
SMC4-205ENST00000465563 SALL2Q9Y467 1007 aaPredicted RBP13.5□□□□□ -0.25
SMC4-205ENST00000465563 CLCN1P35523 988 aa13.49□□□□□ -0.25
SMC4-205ENST00000465563 KRI1Q8N9T8 703 aaKnown RBP13.49□□□□□ -0.25
SMC4-205ENST00000465563 GPCPD1Q9NPB8 672 aa13.49□□□□□ -0.25
SMC4-205ENST00000465563 SPRYD7Q5W111 196 aa13.48□□□□□ -0.25
SMC4-205ENST00000465563 LIAT1Q6ZQX7 453 aa13.48□□□□□ -0.25
SMC4-205ENST00000465563 KDM4AO75164 1064 aa13.47□□□□□ -0.25
SMC4-205ENST00000465563 BRICD5Q6PL45 260 aa13.47□□□□□ -0.25
SMC4-205ENST00000465563 ZNF598Q86UK7 904 aaKnown RBP13.46□□□□□ -0.25
SMC4-205ENST00000465563 FAM160A2Q8N612 972 aaPredicted RBP13.46□□□□□ -0.25
SMC4-205ENST00000465563 BARGINQ6ZT62 677 aa13.45□□□□□ -0.26
SMC4-205ENST00000465563 ZMYND10O75800 440 aa13.44□□□□□ -0.26
SMC4-205ENST00000465563 USP46P62068 366 aa13.44□□□□□ -0.26
SMC4-205ENST00000465563 Q3C1V9 767 aa13.44□□□□□ -0.26
SMC4-205ENST00000465563 PLA2G2CQ5R387 149 aa13.44□□□□□ -0.26
SMC4-205ENST00000465563 ZC3H15Q8WU90 426 aaKnown RBP13.43□□□□□ -0.26
SMC4-205ENST00000465563 FAM217BQ9NTX9 383 aaPredicted RBP13.43□□□□□ -0.26
SMC4-205ENST00000465563 ZNF697Q5TEC3 545 aa13.42□□□□□ -0.26
SMC4-205ENST00000465563 TRAF7Q6Q0C0 670 aa13.42□□□□□ -0.26
SMC4-205ENST00000465563 RNF19BQ6ZMZ0 732 aa13.42□□□□□ -0.26
SMC4-205ENST00000465563 TRIM67Q6ZTA4 783 aa13.41□□□□□ -0.26
SMC4-205ENST00000465563 MSS51Q4VC12 460 aa13.4□□□□□ -0.26
SMC4-205ENST00000465563 FCF1Q9Y324 198 aaKnown RBP13.4□□□□□ -0.26
SMC4-205ENST00000465563 PRDM9Q9NQV7 894 aa13.39□□□□□ -0.27
SMC4-205ENST00000465563 LCE2BO14633 110 aa13.37□□□□□ -0.27
SMC4-205ENST00000465563 HOXA2O43364 376 aa13.37□□□□□ -0.27
SMC4-205ENST00000465563 PRR20EP86478 221 aa13.37□□□□□ -0.27
SMC4-205ENST00000465563 PRR20CP86479 221 aa13.37□□□□□ -0.27
SMC4-205ENST00000465563 PRR20DP86480 221 aa13.37□□□□□ -0.27
SMC4-205ENST00000465563 PRR20BP86481 221 aa13.37□□□□□ -0.27
SMC4-205ENST00000465563 PRR20AP86496 221 aa13.37□□□□□ -0.27
SMC4-205ENST00000465563 RPIAP49247 311 aa13.36□□□□□ -0.27
SMC4-205ENST00000465563 NUTM1Q86Y26 1132 aa13.36□□□□□ -0.27
SMC4-205ENST00000465563 REPIN1Q9BWE0 567 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms