RNA–Protein interactions for RNA: ENST00000455790.5

PDGFB-204, Transcript of platelet derived growth factor subunit B, humanhuman

TSL 4

Gene PDGFB, Length 554 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-204ENST00000455790 HSPA1LP34931 641 aa18.21■□□□□ 0.51
PDGFB-204ENST00000455790 RIMS2Q9UQ26 1411 aa18.21■□□□□ 0.51
PDGFB-204ENST00000455790 XIRP1Q702N8 1843 aaKnown RBP18.21■□□□□ 0.51
PDGFB-204ENST00000455790 NAIPQ13075 1403 aa18.19■□□□□ 0.5
PDGFB-204ENST00000455790 NWD1Q149M9 1564 aa18.17■□□□□ 0.5
PDGFB-204ENST00000455790 CHGAP10645 457 aaKnown RBP18.17■□□□□ 0.5
PDGFB-204ENST00000455790 PLEKHG1Q9ULL1 1385 aa18.17■□□□□ 0.5
PDGFB-204ENST00000455790 ILDR2Q71H61 639 aa18.16■□□□□ 0.5
PDGFB-204ENST00000455790 TMEM94Q12767 1356 aa18.16■□□□□ 0.5
PDGFB-204ENST00000455790 PPP1R15AO75807 674 aaPredicted RBP18.14■□□□□ 0.49
PDGFB-204ENST00000455790 KCNA6P17658 529 aa18.14■□□□□ 0.49
PDGFB-204ENST00000455790 NUTM2DQ5VT03 806 aaPredicted RBP18.14■□□□□ 0.49
PDGFB-204ENST00000455790 RBM33Q96EV2 1170 aaKnown RBP18.14■□□□□ 0.49
PDGFB-204ENST00000455790 BCANQ96GW7 911 aa18.14■□□□□ 0.49
PDGFB-204ENST00000455790 SPHKAPQ2M3C7 1700 aa18.14■□□□□ 0.49
PDGFB-204ENST00000455790 NKTRP30414 1462 aaKnown RBP18.14■□□□□ 0.49
PDGFB-204ENST00000455790 HFM1A2PYH4 1435 aa18.12■□□□□ 0.49
PDGFB-204ENST00000455790 ADAMTS13Q76LX8 1427 aa18.11■□□□□ 0.49
PDGFB-204ENST00000455790 MED1Q15648 1581 aaPredicted RBP18.1■□□□□ 0.49
PDGFB-204ENST00000455790 CLTCL1P53675 1640 aa18.09■□□□□ 0.49
PDGFB-204ENST00000455790 PROSER2Q86WR7 435 aaPredicted RBP18.09■□□□□ 0.49
PDGFB-204ENST00000455790 TRPM2O94759 1503 aa18.08■□□□□ 0.49
PDGFB-204ENST00000455790 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.08■□□□□ 0.48
PDGFB-204ENST00000455790 CHD2O14647 1828 aaKnown RBP18.07■□□□□ 0.48
PDGFB-204ENST00000455790 DIP2AQ14689 1571 aa18.07■□□□□ 0.48
PDGFB-204ENST00000455790 HDGFP51858 240 aaKnown RBP18.06■□□□□ 0.48
PDGFB-204ENST00000455790 NRXN3Q9Y4C0 1643 aa18.05■□□□□ 0.48
PDGFB-204ENST00000455790 TBX22Q9Y458 520 aa18.05■□□□□ 0.48
PDGFB-204ENST00000455790 FAM135BQ49AJ0 1406 aa18.02■□□□□ 0.48
PDGFB-204ENST00000455790 PTPRUQ92729 1446 aa18.02■□□□□ 0.48
PDGFB-204ENST00000455790 TRIM52Q96A61 297 aa18.02■□□□□ 0.48
PDGFB-204ENST00000455790 SETBP1Q9Y6X0 1596 aa18.02■□□□□ 0.48
PDGFB-204ENST00000455790 ROBO1Q9Y6N7 1651 aa18.02■□□□□ 0.47
PDGFB-204ENST00000455790 NEXMIFQ5QGS0 1516 aa18.02■□□□□ 0.47
PDGFB-204ENST00000455790 MSH6P52701 1360 aa18.01■□□□□ 0.47
PDGFB-204ENST00000455790 ZNF326Q5BKZ1 582 aaKnown RBP18■□□□□ 0.47
PDGFB-204ENST00000455790 PIK3R4Q99570 1358 aa17.99■□□□□ 0.47
PDGFB-204ENST00000455790 SLC4A1APQ9BWU0 796 aaKnown RBP17.98■□□□□ 0.47
PDGFB-204ENST00000455790 XRN1Q8IZH2 1706 aaKnown RBP17.98■□□□□ 0.47
PDGFB-204ENST00000455790 KIF1BO60333 1816 aa17.95■□□□□ 0.46
PDGFB-204ENST00000455790 METP08581 1390 aa17.95■□□□□ 0.46
PDGFB-204ENST00000455790 FOXD1Q16676 465 aa17.95■□□□□ 0.46
PDGFB-204ENST00000455790 AMOTL2Q9Y2J4 779 aa17.95■□□□□ 0.46
PDGFB-204ENST00000455790 SOCS7O14512 581 aa17.94■□□□□ 0.46
PDGFB-204ENST00000455790 NCOA3Q9Y6Q9 1424 aa17.94■□□□□ 0.46
PDGFB-204ENST00000455790 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.93■□□□□ 0.46
PDGFB-204ENST00000455790 C14orf37Q86TY3 774 aa17.93■□□□□ 0.46
PDGFB-204ENST00000455790 SLAIN2Q9P270 581 aa17.93■□□□□ 0.46
PDGFB-204ENST00000455790 SETD1AO15047 1707 aaKnown RBP17.89■□□□□ 0.46
PDGFB-204ENST00000455790 PHF23Q9BUL5 403 aaPredicted RBP17.89■□□□□ 0.45
PDGFB-204ENST00000455790 PHLPP1O60346 1717 aa17.89■□□□□ 0.45
PDGFB-204ENST00000455790 C19orf44Q9H6X5 657 aa17.88■□□□□ 0.45
PDGFB-204ENST00000455790 COL16A1Q07092 1604 aaPredicted RBP17.87■□□□□ 0.45
PDGFB-204ENST00000455790 PPLO60437 1756 aa17.87■□□□□ 0.45
PDGFB-204ENST00000455790 CADPS2Q86UW7 1296 aa17.86■□□□□ 0.45
PDGFB-204ENST00000455790 MPHOSPH9Q99550 1183 aa17.86■□□□□ 0.45
PDGFB-204ENST00000455790 CCDC144AA2RUR9 1427 aa17.85■□□□□ 0.45
PDGFB-204ENST00000455790 ATF3P18847 181 aa17.85■□□□□ 0.45
PDGFB-204ENST00000455790 DCCP43146 1447 aa17.85■□□□□ 0.45
PDGFB-204ENST00000455790 NALCNQ8IZF0 1738 aa17.85■□□□□ 0.45
PDGFB-204ENST00000455790 SPATA31E1Q6ZUB1 1445 aa17.84■□□□□ 0.45
PDGFB-204ENST00000455790 SETD5Q9C0A6 1442 aa17.84■□□□□ 0.45
PDGFB-204ENST00000455790 RGS17Q9UGC6 210 aaPredicted RBP17.84■□□□□ 0.45
PDGFB-204ENST00000455790 AHDC1Q5TGY3 1603 aaPredicted RBP17.83■□□□□ 0.45
PDGFB-204ENST00000455790 ADGRL3Q9HAR2 1447 aa17.83■□□□□ 0.45
PDGFB-204ENST00000455790 RPGRIP1LQ68CZ1 1315 aa17.83■□□□□ 0.44
PDGFB-204ENST00000455790 VGFO15240 615 aaPredicted RBP17.83■□□□□ 0.44
PDGFB-204ENST00000455790 MST1RQ04912 1400 aa17.82■□□□□ 0.44
PDGFB-204ENST00000455790 ROBO2Q9HCK4 1378 aa17.82■□□□□ 0.44
PDGFB-204ENST00000455790 PTCH1Q13635 1447 aa17.81■□□□□ 0.44
PDGFB-204ENST00000455790 BRINP3Q76B58 766 aa17.81■□□□□ 0.44
PDGFB-204ENST00000455790 ASXL1Q8IXJ9 1541 aa17.81■□□□□ 0.44
PDGFB-204ENST00000455790 RAB3GAP2Q9H2M9 1393 aa17.8■□□□□ 0.44
PDGFB-204ENST00000455790 JCADQ9P266 1359 aa17.8■□□□□ 0.44
PDGFB-204ENST00000455790 ADGRF5Q8IZF2 1346 aa17.8■□□□□ 0.44
PDGFB-204ENST00000455790 IFT172Q9UG01 1749 aa17.8■□□□□ 0.44
PDGFB-204ENST00000455790 PRAG1Q86YV5 1406 aa17.8■□□□□ 0.44
PDGFB-204ENST00000455790 RGL3Q3MIN7 710 aa17.79■□□□□ 0.44
PDGFB-204ENST00000455790 LRP6O75581 1613 aa17.78■□□□□ 0.44
PDGFB-204ENST00000455790 NHSL1Q5SYE7 1610 aa17.75■□□□□ 0.43
PDGFB-204ENST00000455790 ANKRD30BQ9BXX2 1392 aa17.74■□□□□ 0.43
PDGFB-204ENST00000455790 SHPRHQ149N8 1683 aa17.74■□□□□ 0.43
PDGFB-204ENST00000455790 PIK3C2GO75747 1445 aa17.73■□□□□ 0.43
PDGFB-204ENST00000455790 POTEAQ6S8J7 498 aa17.73■□□□□ 0.43
PDGFB-204ENST00000455790 DDX17Q92841 729 aaKnown RBP17.73■□□□□ 0.43
PDGFB-204ENST00000455790 C1orf167Q5SNV9 1468 aa17.73■□□□□ 0.43
PDGFB-204ENST00000455790 TECPR2O15040 1411 aa17.7■□□□□ 0.42
PDGFB-204ENST00000455790 SPATA31A6Q5VVP1 1343 aa17.7■□□□□ 0.42
PDGFB-204ENST00000455790 ACIN1Q9UKV3 1341 aaKnown RBP17.69■□□□□ 0.42
PDGFB-204ENST00000455790 NRXN1Q9ULB1 1477 aa17.69■□□□□ 0.42
PDGFB-204ENST00000455790 LRPPRCP42704 1394 aaKnown RBP17.68■□□□□ 0.42
PDGFB-204ENST00000455790 CDC42BPGQ6DT37 1551 aa17.68■□□□□ 0.42
PDGFB-204ENST00000455790 TMEM132EQ6IEE7 984 aa17.68■□□□□ 0.42
PDGFB-204ENST00000455790 STK26Q9P289 416 aa17.68■□□□□ 0.42
PDGFB-204ENST00000455790 MYOM2P54296 1465 aa17.68■□□□□ 0.42
PDGFB-204ENST00000455790 PLEKHH1Q9ULM0 1364 aa17.67■□□□□ 0.42
PDGFB-204ENST00000455790 KNDC1Q76NI1 1749 aa17.67■□□□□ 0.42
PDGFB-204ENST00000455790 ORAI2Q96SN7 254 aa17.67■□□□□ 0.42
PDGFB-204ENST00000455790 LAMC1P11047 1609 aa17.66■□□□□ 0.42
PDGFB-204ENST00000455790 YTHDC2Q9H6S0 1430 aaKnown RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms