RNA–Protein interactions for RNA: ENST00000418882.2

HMGB1P49-201, Transcript of high mobility group box 1 pseudogene 49, humanhuman

BASIC

Gene HMGB1P49, Length 569 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P49-201ENST00000418882 SOWAHBA6NEL2 793 aa10.58□□□□□ -0.72
HMGB1P49-201ENST00000418882 MDM2Q00987 491 aaPredicted RBP10.58□□□□□ -0.72
HMGB1P49-201ENST00000418882 AMHR2Q16671 573 aa10.58□□□□□ -0.72
HMGB1P49-201ENST00000418882 ANKK1Q8NFD2 765 aa10.58□□□□□ -0.72
HMGB1P49-201ENST00000418882 TMUB1Q9BVT8 246 aa10.58□□□□□ -0.72
HMGB1P49-201ENST00000418882 LRCH3Q96II8 777 aa10.56□□□□□ -0.72
HMGB1P49-201ENST00000418882 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.56□□□□□ -0.72
HMGB1P49-201ENST00000418882 PDE4DQ08499 809 aa10.54□□□□□ -0.72
HMGB1P49-201ENST00000418882 PARP9Q8IXQ6 854 aa10.54□□□□□ -0.72
HMGB1P49-201ENST00000418882 DAXXQ9UER7 740 aaPredicted RBP10.54□□□□□ -0.72
HMGB1P49-201ENST00000418882 RNF40O75150 1001 aa10.53□□□□□ -0.72
HMGB1P49-201ENST00000418882 SLC10A3P09131 477 aa10.53□□□□□ -0.72
HMGB1P49-201ENST00000418882 WBP1LQ9NX94 342 aa10.53□□□□□ -0.72
HMGB1P49-201ENST00000418882 HPS5Q9UPZ3 1129 aa10.53□□□□□ -0.72
HMGB1P49-201ENST00000418882 PTPN5P54829 565 aa10.52□□□□□ -0.73
HMGB1P49-201ENST00000418882 GPCPD1Q9NPB8 672 aa10.51□□□□□ -0.73
HMGB1P49-201ENST00000418882 PLSCR2Q9NRY7 297 aa10.51□□□□□ -0.73
HMGB1P49-201ENST00000418882 TTLL12Q14166 644 aaPredicted RBP10.5□□□□□ -0.73
HMGB1P49-201ENST00000418882 GPBP1L1Q9HC44 474 aaPredicted RBP10.5□□□□□ -0.73
HMGB1P49-201ENST00000418882 DDX11L8A8MPP1 907 aa10.49□□□□□ -0.73
HMGB1P49-201ENST00000418882 CLCN1P35523 988 aa10.49□□□□□ -0.73
HMGB1P49-201ENST00000418882 GIGYF2Q6Y7W6 1299 aaKnown RBP10.49□□□□□ -0.73
HMGB1P49-201ENST00000418882 FAM217BQ9NTX9 383 aaPredicted RBP10.49□□□□□ -0.73
HMGB1P49-201ENST00000418882 TSR3Q9UJK0 312 aaKnown RBP10.49□□□□□ -0.73
HMGB1P49-201ENST00000418882 SLF2Q8IX21 1173 aa10.48□□□□□ -0.73
HMGB1P49-201ENST00000418882 MS4A1P11836 297 aa10.47□□□□□ -0.73
HMGB1P49-201ENST00000418882 APLP1P51693 650 aa10.47□□□□□ -0.73
HMGB1P49-201ENST00000418882 HDGFP51858 240 aaKnown RBP10.47□□□□□ -0.73
HMGB1P49-201ENST00000418882 CD46P15529 392 aa10.45□□□□□ -0.74
HMGB1P49-201ENST00000418882 BRPF1P55201 1214 aaPredicted RBP10.45□□□□□ -0.74
HMGB1P49-201ENST00000418882 PPP4CP60510 307 aa10.45□□□□□ -0.74
HMGB1P49-201ENST00000418882 CFHP08603 1231 aa10.44□□□□□ -0.74
HMGB1P49-201ENST00000418882 SSTR3P32745 418 aaPredicted RBP10.44□□□□□ -0.74
HMGB1P49-201ENST00000418882 RDH13Q8NBN7 331 aa10.44□□□□□ -0.74
HMGB1P49-201ENST00000418882 HCSTQ9UBK5 93 aa10.43□□□□□ -0.74
HMGB1P49-201ENST00000418882 KDM4CQ9H3R0 1056 aa10.42□□□□□ -0.74
HMGB1P49-201ENST00000418882 SULF1Q8IWU6 871 aa10.41□□□□□ -0.74
HMGB1P49-201ENST00000418882 GCGRP47871 477 aa10.4□□□□□ -0.74
HMGB1P49-201ENST00000418882 NEUROD2Q15784 382 aa10.39□□□□□ -0.75
HMGB1P49-201ENST00000418882 SLC4A3P48751 1232 aa10.38□□□□□ -0.75
HMGB1P49-201ENST00000418882 BEGAINQ9BUH8 593 aa10.37□□□□□ -0.75
HMGB1P49-201ENST00000418882 FUT2Q10981 343 aa10.36□□□□□ -0.75
HMGB1P49-201ENST00000418882 FAM117AQ9C073 453 aa10.36□□□□□ -0.75
HMGB1P49-201ENST00000418882 ACTN4O43707 911 aaKnown RBP10.35□□□□□ -0.75
HMGB1P49-201ENST00000418882 PUS10Q3MIT2 529 aaKnown RBP10.35□□□□□ -0.75
HMGB1P49-201ENST00000418882 HLA-CQ95604 372 aa10.35□□□□□ -0.75
HMGB1P49-201ENST00000418882 PLEKHG3A1L390 1219 aa10.34□□□□□ -0.75
HMGB1P49-201ENST00000418882 KMT5BQ4FZB7 885 aa10.34□□□□□ -0.75
HMGB1P49-201ENST00000418882 NYAP1Q6ZVC0 841 aa10.34□□□□□ -0.75
HMGB1P49-201ENST00000418882 TJAP1Q5JTD0 557 aa10.33□□□□□ -0.76
HMGB1P49-201ENST00000418882 RSPH4AQ5TD94 716 aa10.33□□□□□ -0.76
HMGB1P49-201ENST00000418882 BLOC1S3Q6QNY0 202 aa10.33□□□□□ -0.76
HMGB1P49-201ENST00000418882 NECTIN2Q92692 538 aa10.33□□□□□ -0.76
HMGB1P49-201ENST00000418882 KDM4AO75164 1064 aa10.32□□□□□ -0.76
HMGB1P49-201ENST00000418882 COPS2P61201 443 aa10.32□□□□□ -0.76
HMGB1P49-201ENST00000418882 SPIRE2Q8WWL2 714 aa10.32□□□□□ -0.76
HMGB1P49-201ENST00000418882 MTRQ99707 1265 aa10.32□□□□□ -0.76
HMGB1P49-201ENST00000418882 GUCA2AQ02747 115 aa10.31□□□□□ -0.76
HMGB1P49-201ENST00000418882 ZNF516Q92618 1163 aa10.31□□□□□ -0.76
HMGB1P49-201ENST00000418882 PCDHB3Q9Y5E6 796 aa10.31□□□□□ -0.76
HMGB1P49-201ENST00000418882 HOXA2O43364 376 aa10.3□□□□□ -0.76
HMGB1P49-201ENST00000418882 MORN1Q5T089 497 aa10.29□□□□□ -0.76
HMGB1P49-201ENST00000418882 PRR14Q9BWN1 585 aa10.29□□□□□ -0.76
HMGB1P49-201ENST00000418882 TBC1D2Q9BYX2 928 aa10.29□□□□□ -0.76
HMGB1P49-201ENST00000418882 ITGBL1O95965 494 aaPredicted RBP10.28□□□□□ -0.76
HMGB1P49-201ENST00000418882 MOXD2PA6NHM9 499 aa10.27□□□□□ -0.77
HMGB1P49-201ENST00000418882 TLL1O43897 1013 aa10.27□□□□□ -0.77
HMGB1P49-201ENST00000418882 NDUFV2P19404 249 aa10.27□□□□□ -0.77
HMGB1P49-201ENST00000418882 ATP6V1AP38606 617 aa10.27□□□□□ -0.77
HMGB1P49-201ENST00000418882 NUTM1Q86Y26 1132 aa10.27□□□□□ -0.77
HMGB1P49-201ENST00000418882 SLC27A5Q9Y2P5 690 aa10.27□□□□□ -0.77
HMGB1P49-201ENST00000418882 IL27Q8NEV9 243 aa10.26□□□□□ -0.77
HMGB1P49-201ENST00000418882 PCDHGC3Q9UN70 934 aa10.26□□□□□ -0.77
HMGB1P49-201ENST00000418882 MYSM1Q5VVJ2 828 aa10.25□□□□□ -0.77
HMGB1P49-201ENST00000418882 NKX2-3Q8TAU0 364 aa10.25□□□□□ -0.77
HMGB1P49-201ENST00000418882 USP46P62068 366 aa10.24□□□□□ -0.77
HMGB1P49-201ENST00000418882 SCUBE3Q8IX30 993 aa10.24□□□□□ -0.77
HMGB1P49-201ENST00000418882 IL21Q9HBE4 155 aa10.24□□□□□ -0.77
HMGB1P49-201ENST00000418882 ZPR1O75312 459 aa10.23□□□□□ -0.77
HMGB1P49-201ENST00000418882 DDRGK1Q96HY6 314 aa10.23□□□□□ -0.77
HMGB1P49-201ENST00000418882 LIMD1Q9UGP4 676 aa10.23□□□□□ -0.77
HMGB1P49-201ENST00000418882 RSBN1LQ6PCB5 846 aaPredicted RBP10.22□□□□□ -0.77
HMGB1P49-201ENST00000418882 RNF19BQ6ZMZ0 732 aa10.22□□□□□ -0.77
HMGB1P49-201ENST00000418882 THAP11Q96EK4 314 aa10.22□□□□□ -0.77
HMGB1P49-201ENST00000418882 PLA2G2EQ9NZK7 142 aa10.22□□□□□ -0.77
HMGB1P49-201ENST00000418882 SYMPKQ92797 1274 aaKnown RBP10.21□□□□□ -0.77
HMGB1P49-201ENST00000418882 PCDHB15Q9Y5E8 787 aa10.21□□□□□ -0.77
HMGB1P49-201ENST00000418882 NR1I2O75469 434 aa10.2□□□□□ -0.78
HMGB1P49-201ENST00000418882 KCNC4Q03721 635 aa10.2□□□□□ -0.78
HMGB1P49-201ENST00000418882 FBXO31Q5XUX0 539 aaPredicted RBP10.2□□□□□ -0.78
HMGB1P49-201ENST00000418882 POLR3EQ9NVU0 708 aa10.2□□□□□ -0.78
HMGB1P49-201ENST00000418882 SPTLC1O15269 473 aa10.19□□□□□ -0.78
HMGB1P49-201ENST00000418882 FDX1P10109 184 aa10.19□□□□□ -0.78
HMGB1P49-201ENST00000418882 RIC3Q7Z5B4 369 aa10.19□□□□□ -0.78
HMGB1P49-201ENST00000418882 GRIPAP1Q4V328 841 aa10.18□□□□□ -0.78
HMGB1P49-201ENST00000418882 SH3D19Q5HYK7 790 aa10.18□□□□□ -0.78
HMGB1P49-201ENST00000418882 BRICD5Q6PL45 260 aa10.18□□□□□ -0.78
HMGB1P49-201ENST00000418882 PROCA1Q8NCQ7 364 aaPredicted RBP10.17□□□□□ -0.78
HMGB1P49-201ENST00000418882 CLK2P49760 499 aaKnown RBP10.16□□□□□ -0.78
HMGB1P49-201ENST00000418882 DIXDC1Q155Q3 683 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms