RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 RPRD2Q5VT52 1461 aaKnown RBP25.24■■□□□ 1.63
CUX2-202ENST00000397643 SLC52A1Q9NWF4 448 aa25.24■■□□□ 1.63
CUX2-202ENST00000397643 MYO5BQ9ULV0 1848 aa25.22■■□□□ 1.63
CUX2-202ENST00000397643 APLP2Q06481 763 aa25.21■■□□□ 1.63
CUX2-202ENST00000397643 CHD2O14647 1828 aaKnown RBP25.21■■□□□ 1.63
CUX2-202ENST00000397643 MSH6P52701 1360 aa25.2■■□□□ 1.63
CUX2-202ENST00000397643 PLEKHG1Q9ULL1 1385 aa25.2■■□□□ 1.63
CUX2-202ENST00000397643 GCC2Q8IWJ2 1684 aa25.19■■□□□ 1.62
CUX2-202ENST00000397643 TMEM131LA2VDJ0 1609 aa25.19■■□□□ 1.62
CUX2-202ENST00000397643 PHLPP1O60346 1717 aa25.18■■□□□ 1.62
CUX2-202ENST00000397643 ANKRD50Q9ULJ7 1429 aa25.18■■□□□ 1.62
CUX2-202ENST00000397643 RIMS2Q9UQ26 1411 aa25.17■■□□□ 1.62
CUX2-202ENST00000397643 SLAIN2Q9P270 581 aa25.16■■□□□ 1.62
CUX2-202ENST00000397643 COL16A1Q07092 1604 aaPredicted RBP25.15■■□□□ 1.62
CUX2-202ENST00000397643 JCADQ9P266 1359 aa25.14■■□□□ 1.61
CUX2-202ENST00000397643 SETD1AO15047 1707 aaKnown RBP25.13■■□□□ 1.61
CUX2-202ENST00000397643 BCANQ96GW7 911 aa25.13■■□□□ 1.61
CUX2-202ENST00000397643 UNC13BO14795 1591 aa25.12■■□□□ 1.61
CUX2-202ENST00000397643 ADAMTS13Q76LX8 1427 aa25.11■■□□□ 1.61
CUX2-202ENST00000397643 NCOA3Q9Y6Q9 1424 aa25.1■■□□□ 1.61
CUX2-202ENST00000397643 TBX22Q9Y458 520 aa25.09■■□□□ 1.61
CUX2-202ENST00000397643 LRP6O75581 1613 aa25.08■■□□□ 1.61
CUX2-202ENST00000397643 PPP1R15AO75807 674 aaPredicted RBP25.08■■□□□ 1.61
CUX2-202ENST00000397643 E9PCH4 1651 aa25.07■■□□□ 1.6
CUX2-202ENST00000397643 FAM50AQ14320 339 aaKnown RBP25.07■■□□□ 1.6
CUX2-202ENST00000397643 DIP2AQ14689 1571 aa25.06■■□□□ 1.6
CUX2-202ENST00000397643 AHDC1Q5TGY3 1603 aaPredicted RBP25.04■■□□□ 1.6
CUX2-202ENST00000397643 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.04■■□□□ 1.6
CUX2-202ENST00000397643 HDGFP51858 240 aaKnown RBP25.04■■□□□ 1.6
CUX2-202ENST00000397643 PIK3R4Q99570 1358 aa25.02■■□□□ 1.6
CUX2-202ENST00000397643 IQGAP3Q86VI3 1631 aa25.01■■□□□ 1.59
CUX2-202ENST00000397643 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.01■■□□□ 1.59
CUX2-202ENST00000397643 SPATA31A6Q5VVP1 1343 aa25■■□□□ 1.59
CUX2-202ENST00000397643 SHPRHQ149N8 1683 aa25■■□□□ 1.59
CUX2-202ENST00000397643 NUTM2DQ5VT03 806 aaPredicted RBP24.99■■□□□ 1.59
CUX2-202ENST00000397643 PTPRUQ92729 1446 aa24.98■■□□□ 1.59
CUX2-202ENST00000397643 CHGAP10645 457 aaKnown RBP24.97■■□□□ 1.59
CUX2-202ENST00000397643 CADPS2Q86UW7 1296 aa24.97■■□□□ 1.59
CUX2-202ENST00000397643 C19orf44Q9H6X5 657 aa24.97■■□□□ 1.59
CUX2-202ENST00000397643 TRPM2O94759 1503 aa24.96■■□□□ 1.59
CUX2-202ENST00000397643 C14orf37Q86TY3 774 aa24.96■■□□□ 1.59
CUX2-202ENST00000397643 ROCK1Q13464 1354 aa24.95■■□□□ 1.59
CUX2-202ENST00000397643 NRXN3Q9Y4C0 1643 aa24.94■■□□□ 1.58
CUX2-202ENST00000397643 XRN1Q8IZH2 1706 aaKnown RBP24.92■■□□□ 1.58
CUX2-202ENST00000397643 ATF3P18847 181 aa24.92■■□□□ 1.58
CUX2-202ENST00000397643 BRINP3Q76B58 766 aa24.91■■□□□ 1.58
CUX2-202ENST00000397643 DCCP43146 1447 aa24.91■■□□□ 1.58
CUX2-202ENST00000397643 ZNF772Q68DY9 489 aaPredicted RBP24.9■■□□□ 1.58
CUX2-202ENST00000397643 AMOTL2Q9Y2J4 779 aa24.9■■□□□ 1.58
CUX2-202ENST00000397643 SETBP1Q9Y6X0 1596 aa24.89■■□□□ 1.58
CUX2-202ENST00000397643 MEX3CQ5U5Q3 659 aaKnown RBP24.89■■□□□ 1.58
CUX2-202ENST00000397643 ASXL1Q8IXJ9 1541 aa24.88■■□□□ 1.57
CUX2-202ENST00000397643 UPF1Q92900 1129 aaKnown RBP eCLIP24.87■■□□□ 1.57
CUX2-202ENST00000397643 NUP155O75694 1391 aa24.87■■□□□ 1.57
CUX2-202ENST00000397643 MST1RQ04912 1400 aa24.86■■□□□ 1.57
CUX2-202ENST00000397643 NHSL1Q5SYE7 1610 aa24.85■■□□□ 1.57
CUX2-202ENST00000397643 TRIM52Q96A61 297 aa24.84■■□□□ 1.57
CUX2-202ENST00000397643 SETD5Q9C0A6 1442 aa24.84■■□□□ 1.57
CUX2-202ENST00000397643 SPHKAPQ2M3C7 1700 aa24.82■■□□□ 1.56
CUX2-202ENST00000397643 CDK12Q9NYV4 1490 aaPredicted RBP24.82■■□□□ 1.56
CUX2-202ENST00000397643 METP08581 1390 aa24.8■■□□□ 1.56
CUX2-202ENST00000397643 RXRBP28702 533 aa24.78■■□□□ 1.56
CUX2-202ENST00000397643 NUTM2BA6NNL0 878 aaPredicted RBP24.77■■□□□ 1.56
CUX2-202ENST00000397643 NUTM2EB1AL46 878 aaPredicted RBP24.77■■□□□ 1.56
CUX2-202ENST00000397643 NUTM2AQ8IVF1 878 aaPredicted RBP24.77■■□□□ 1.56
CUX2-202ENST00000397643 ADGRL3Q9HAR2 1447 aa24.77■■□□□ 1.56
CUX2-202ENST00000397643 NALCNQ8IZF0 1738 aa24.76■■□□□ 1.55
CUX2-202ENST00000397643 AFF2P51816 1311 aa24.76■■□□□ 1.55
CUX2-202ENST00000397643 NEXMIFQ5QGS0 1516 aa24.76■■□□□ 1.55
CUX2-202ENST00000397643 CLTCL1P53675 1640 aa24.74■■□□□ 1.55
CUX2-202ENST00000397643 PNPLA6Q8IY17 1366 aa24.73■■□□□ 1.55
CUX2-202ENST00000397643 DDX17Q92841 729 aaKnown RBP24.72■■□□□ 1.55
CUX2-202ENST00000397643 RGS12O14924 1447 aa24.7■■□□□ 1.55
CUX2-202ENST00000397643 ITGAEP38570 1179 aa24.7■■□□□ 1.54
CUX2-202ENST00000397643 ZNF326Q5BKZ1 582 aaKnown RBP24.7■■□□□ 1.54
CUX2-202ENST00000397643 LRRC59Q96AG4 307 aaKnown RBP24.7■■□□□ 1.54
CUX2-202ENST00000397643 LAMC1P11047 1609 aa24.69■■□□□ 1.54
CUX2-202ENST00000397643 C1orf167Q5SNV9 1468 aa24.66■■□□□ 1.54
CUX2-202ENST00000397643 PTCH1Q13635 1447 aa24.65■■□□□ 1.54
CUX2-202ENST00000397643 C8orf37Q96NL8 207 aa24.65■■□□□ 1.54
CUX2-202ENST00000397643 PRAG1Q86YV5 1406 aa24.62■■□□□ 1.53
CUX2-202ENST00000397643 RBM6P78332 1123 aaKnown RBP24.62■■□□□ 1.53
CUX2-202ENST00000397643 KIF1BO60333 1816 aa24.61■■□□□ 1.53
CUX2-202ENST00000397643 QTRT2Q9H974 415 aaKnown RBP24.61■■□□□ 1.53
CUX2-202ENST00000397643 ROBO2Q9HCK4 1378 aa24.6■■□□□ 1.53
CUX2-202ENST00000397643 SOS2Q07890 1332 aaPredicted RBP24.58■■□□□ 1.52
CUX2-202ENST00000397643 NAIPQ13075 1403 aa24.56■■□□□ 1.52
CUX2-202ENST00000397643 SRCAPQ6ZRS2 3230 aa24.55■■□□□ 1.52
CUX2-202ENST00000397643 ADAMTS2O95450 1211 aa24.55■■□□□ 1.52
CUX2-202ENST00000397643 ORAI2Q96SN7 254 aa24.55■■□□□ 1.52
CUX2-202ENST00000397643 PPARGC1BQ86YN6 1023 aaKnown RBP24.54■■□□□ 1.52
CUX2-202ENST00000397643 NGLY1Q96IV0 654 aa24.54■■□□□ 1.52
CUX2-202ENST00000397643 COL22A1Q8NFW1 1626 aaPredicted RBP24.53■■□□□ 1.52
CUX2-202ENST00000397643 RRBP1Q9P2E9 1410 aaKnown RBP24.51■■□□□ 1.51
CUX2-202ENST00000397643 HFM1A2PYH4 1435 aa24.5■■□□□ 1.51
CUX2-202ENST00000397643 PPLO60437 1756 aa24.49■■□□□ 1.51
CUX2-202ENST00000397643 VGFO15240 615 aaPredicted RBP24.49■■□□□ 1.51
CUX2-202ENST00000397643 FNBP4Q8N3X1 1017 aaPredicted RBP24.49■■□□□ 1.51
CUX2-202ENST00000397643 MYOM2P54296 1465 aa24.49■■□□□ 1.51
CUX2-202ENST00000397643 ATRNO75882 1429 aa24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms