RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 ZFYVE9O95405 1425 aa15.9■□□□□ 0.14
NEDD8-202ENST00000396828 UNC13BO14795 1591 aa15.9■□□□□ 0.14
NEDD8-202ENST00000396828 TMEM131LA2VDJ0 1609 aa15.89■□□□□ 0.13
NEDD8-202ENST00000396828 E9PCH4 1651 aa15.89■□□□□ 0.13
NEDD8-202ENST00000396828 ITGAEP38570 1179 aa15.88■□□□□ 0.13
NEDD8-202ENST00000396828 PROSER2Q86WR7 435 aaPredicted RBP15.88■□□□□ 0.13
NEDD8-202ENST00000396828 BCANQ96GW7 911 aa15.87■□□□□ 0.13
NEDD8-202ENST00000396828 NWD1Q149M9 1564 aa15.87■□□□□ 0.13
NEDD8-202ENST00000396828 RIMS2Q9UQ26 1411 aa15.86■□□□□ 0.13
NEDD8-202ENST00000396828 NUTM2DQ5VT03 806 aaPredicted RBP15.86■□□□□ 0.13
NEDD8-202ENST00000396828 RGS17Q9UGC6 210 aaPredicted RBP15.85■□□□□ 0.13
NEDD8-202ENST00000396828 ROCK1Q13464 1354 aa15.85■□□□□ 0.13
NEDD8-202ENST00000396828 FAM135BQ49AJ0 1406 aa15.85■□□□□ 0.13
NEDD8-202ENST00000396828 IQGAP3Q86VI3 1631 aa15.84■□□□□ 0.13
NEDD8-202ENST00000396828 ROBO1Q9Y6N7 1651 aa15.84■□□□□ 0.13
NEDD8-202ENST00000396828 CHGAP10645 457 aaKnown RBP15.84■□□□□ 0.13
NEDD8-202ENST00000396828 CHD2O14647 1828 aaKnown RBP15.84■□□□□ 0.13
NEDD8-202ENST00000396828 PLEKHG1Q9ULL1 1385 aa15.84■□□□□ 0.13
NEDD8-202ENST00000396828 NKTRP30414 1462 aaKnown RBP15.83■□□□□ 0.12
NEDD8-202ENST00000396828 NUP155O75694 1391 aa15.81■□□□□ 0.12
NEDD8-202ENST00000396828 PPP1R15AO75807 674 aaPredicted RBP15.81■□□□□ 0.12
NEDD8-202ENST00000396828 ADAMTS13Q76LX8 1427 aa15.8■□□□□ 0.12
NEDD8-202ENST00000396828 TBX22Q9Y458 520 aa15.79■□□□□ 0.12
NEDD8-202ENST00000396828 MSH6P52701 1360 aa15.77■□□□□ 0.12
NEDD8-202ENST00000396828 SLAIN2Q9P270 581 aa15.77■□□□□ 0.12
NEDD8-202ENST00000396828 HDGFP51858 240 aaKnown RBP15.76■□□□□ 0.11
NEDD8-202ENST00000396828 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.76■□□□□ 0.11
NEDD8-202ENST00000396828 PTPRUQ92729 1446 aa15.75■□□□□ 0.11
NEDD8-202ENST00000396828 POTEAQ6S8J7 498 aa15.73■□□□□ 0.11
NEDD8-202ENST00000396828 PHLPP1O60346 1717 aa15.73■□□□□ 0.11
NEDD8-202ENST00000396828 NRXN3Q9Y4C0 1643 aa15.72■□□□□ 0.11
NEDD8-202ENST00000396828 SPHKAPQ2M3C7 1700 aa15.72■□□□□ 0.11
NEDD8-202ENST00000396828 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.72■□□□□ 0.11
NEDD8-202ENST00000396828 AMOTL2Q9Y2J4 779 aa15.71■□□□□ 0.11
NEDD8-202ENST00000396828 DIP2AQ14689 1571 aa15.7■□□□□ 0.1
NEDD8-202ENST00000396828 C14orf37Q86TY3 774 aa15.7■□□□□ 0.1
NEDD8-202ENST00000396828 COL16A1Q07092 1604 aaPredicted RBP15.69■□□□□ 0.1
NEDD8-202ENST00000396828 RRBP1Q9P2E9 1410 aaKnown RBP15.68■□□□□ 0.1
NEDD8-202ENST00000396828 NCOA3Q9Y6Q9 1424 aa15.68■□□□□ 0.1
NEDD8-202ENST00000396828 TRPM2O94759 1503 aa15.68■□□□□ 0.1
NEDD8-202ENST00000396828 PIK3R4Q99570 1358 aa15.68■□□□□ 0.1
NEDD8-202ENST00000396828 CLTCL1P53675 1640 aa15.68■□□□□ 0.1
NEDD8-202ENST00000396828 NAIPQ13075 1403 aa15.68■□□□□ 0.1
NEDD8-202ENST00000396828 ZNF326Q5BKZ1 582 aaKnown RBP15.67■□□□□ 0.1
NEDD8-202ENST00000396828 C19orf44Q9H6X5 657 aa15.67■□□□□ 0.1
NEDD8-202ENST00000396828 SETBP1Q9Y6X0 1596 aa15.66■□□□□ 0.1
NEDD8-202ENST00000396828 XRN1Q8IZH2 1706 aaKnown RBP15.66■□□□□ 0.1
NEDD8-202ENST00000396828 METP08581 1390 aa15.66■□□□□ 0.1
NEDD8-202ENST00000396828 JCADQ9P266 1359 aa15.66■□□□□ 0.1
NEDD8-202ENST00000396828 ATF3P18847 181 aa15.65■□□□□ 0.1
NEDD8-202ENST00000396828 CADPS2Q86UW7 1296 aa15.65■□□□□ 0.1
NEDD8-202ENST00000396828 LRP6O75581 1613 aa15.65■□□□□ 0.1
NEDD8-202ENST00000396828 NEXMIFQ5QGS0 1516 aa15.64■□□□□ 0.09
NEDD8-202ENST00000396828 BRINP3Q76B58 766 aa15.63■□□□□ 0.09
NEDD8-202ENST00000396828 AHDC1Q5TGY3 1603 aaPredicted RBP15.62■□□□□ 0.09
NEDD8-202ENST00000396828 SETD1AO15047 1707 aaKnown RBP15.6■□□□□ 0.09
NEDD8-202ENST00000396828 MST1RQ04912 1400 aa15.6■□□□□ 0.09
NEDD8-202ENST00000396828 KIF1BO60333 1816 aa15.59■□□□□ 0.09
NEDD8-202ENST00000396828 SHPRHQ149N8 1683 aa15.58■□□□□ 0.08
NEDD8-202ENST00000396828 DDX17Q92841 729 aaKnown RBP15.58■□□□□ 0.08
NEDD8-202ENST00000396828 TRIM52Q96A61 297 aa15.58■□□□□ 0.08
NEDD8-202ENST00000396828 ASXL1Q8IXJ9 1541 aa15.58■□□□□ 0.08
NEDD8-202ENST00000396828 NALCNQ8IZF0 1738 aa15.57■□□□□ 0.08
NEDD8-202ENST00000396828 FOXD1Q16676 465 aa15.57■□□□□ 0.08
NEDD8-202ENST00000396828 HFM1A2PYH4 1435 aa15.57■□□□□ 0.08
NEDD8-202ENST00000396828 DCCP43146 1447 aa15.57■□□□□ 0.08
NEDD8-202ENST00000396828 SPATA31A6Q5VVP1 1343 aa15.56■□□□□ 0.08
NEDD8-202ENST00000396828 NHSL1Q5SYE7 1610 aa15.55■□□□□ 0.08
NEDD8-202ENST00000396828 ADGRL3Q9HAR2 1447 aa15.55■□□□□ 0.08
NEDD8-202ENST00000396828 NUTM2BA6NNL0 878 aaPredicted RBP15.54■□□□□ 0.08
NEDD8-202ENST00000396828 NUTM2EB1AL46 878 aaPredicted RBP15.54■□□□□ 0.08
NEDD8-202ENST00000396828 NUTM2AQ8IVF1 878 aaPredicted RBP15.54■□□□□ 0.08
NEDD8-202ENST00000396828 SLC4A1APQ9BWU0 796 aaKnown RBP15.54■□□□□ 0.08
NEDD8-202ENST00000396828 ROBO2Q9HCK4 1378 aa15.53■□□□□ 0.08
NEDD8-202ENST00000396828 MEX3CQ5U5Q3 659 aaKnown RBP15.53■□□□□ 0.08
NEDD8-202ENST00000396828 SETD5Q9C0A6 1442 aa15.51■□□□□ 0.07
NEDD8-202ENST00000396828 VGFO15240 615 aaPredicted RBP15.51■□□□□ 0.07
NEDD8-202ENST00000396828 PPLO60437 1756 aa15.51■□□□□ 0.07
NEDD8-202ENST00000396828 C1orf167Q5SNV9 1468 aa15.49■□□□□ 0.07
NEDD8-202ENST00000396828 ZNF772Q68DY9 489 aaPredicted RBP15.49■□□□□ 0.07
NEDD8-202ENST00000396828 ORAI2Q96SN7 254 aa15.49■□□□□ 0.07
NEDD8-202ENST00000396828 PTCH1Q13635 1447 aa15.48■□□□□ 0.07
NEDD8-202ENST00000396828 RPGRIP1LQ68CZ1 1315 aa15.47■□□□□ 0.07
NEDD8-202ENST00000396828 LRRC59Q96AG4 307 aaKnown RBP15.47■□□□□ 0.07
NEDD8-202ENST00000396828 PNPLA6Q8IY17 1366 aa15.47■□□□□ 0.07
NEDD8-202ENST00000396828 AFF2P51816 1311 aa15.46■□□□□ 0.07
NEDD8-202ENST00000396828 ADGRF5Q8IZF2 1346 aa15.46■□□□□ 0.07
NEDD8-202ENST00000396828 RGL3Q3MIN7 710 aa15.45■□□□□ 0.06
NEDD8-202ENST00000396828 PRAG1Q86YV5 1406 aa15.44■□□□□ 0.06
NEDD8-202ENST00000396828 MPHOSPH9Q99550 1183 aa15.44■□□□□ 0.06
NEDD8-202ENST00000396828 SPATA31E1Q6ZUB1 1445 aa15.43■□□□□ 0.06
NEDD8-202ENST00000396828 LAMC1P11047 1609 aa15.43■□□□□ 0.06
NEDD8-202ENST00000396828 RXRBP28702 533 aa15.43■□□□□ 0.06
NEDD8-202ENST00000396828 UPF1Q92900 1129 aaKnown RBP eCLIP15.43■□□□□ 0.063e-7■□□□□ 10.1
NEDD8-202ENST00000396828 C8orf37Q96NL8 207 aa15.43■□□□□ 0.06
NEDD8-202ENST00000396828 SOS2Q07890 1332 aaPredicted RBP15.43■□□□□ 0.06
NEDD8-202ENST00000396828 ADAMTS2O95450 1211 aa15.42■□□□□ 0.06
NEDD8-202ENST00000396828 IFT172Q9UG01 1749 aa15.42■□□□□ 0.06
NEDD8-202ENST00000396828 TMEM132EQ6IEE7 984 aa15.41■□□□□ 0.06
NEDD8-202ENST00000396828 WAPLQ7Z5K2 1190 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms