RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 CHGAP10645 457 aaKnown RBP32.07■■■□□ 2.72
VSX1-201ENST00000376707 E9PCH4 1651 aa32.07■■■□□ 2.72
VSX1-201ENST00000376707 ZFYVE9O95405 1425 aa32.06■■■□□ 2.72
VSX1-201ENST00000376707 RIMS2Q9UQ26 1411 aa32.06■■■□□ 2.72
VSX1-201ENST00000376707 TMEM131LA2VDJ0 1609 aa32.04■■■□□ 2.72
VSX1-201ENST00000376707 SENP3Q9H4L4 574 aaPredicted RBP32.04■■■□□ 2.72
VSX1-201ENST00000376707 TMEM94Q12767 1356 aa32.03■■■□□ 2.72
VSX1-201ENST00000376707 PLEKHG1Q9ULL1 1385 aa32.03■■■□□ 2.72
VSX1-201ENST00000376707 PROSER2Q86WR7 435 aaPredicted RBP32.01■■■□□ 2.71
VSX1-201ENST00000376707 XIRP1Q702N8 1843 aaKnown RBP32■■■□□ 2.71
VSX1-201ENST00000376707 SOCS7O14512 581 aa32■■■□□ 2.71
VSX1-201ENST00000376707 MYO5BQ9ULV0 1848 aa32■■■□□ 2.71
VSX1-201ENST00000376707 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.99■■■□□ 2.71
VSX1-201ENST00000376707 RRBP1Q9P2E9 1410 aaKnown RBP31.98■■■□□ 2.71
VSX1-201ENST00000376707 MED1Q15648 1581 aaPredicted RBP31.98■■■□□ 2.71
VSX1-201ENST00000376707 NKTRP30414 1462 aaKnown RBP31.97■■■□□ 2.71
VSX1-201ENST00000376707 NWD1Q149M9 1564 aa31.96■■■□□ 2.71
VSX1-201ENST00000376707 RBM33Q96EV2 1170 aaKnown RBP31.95■■■□□ 2.71
VSX1-201ENST00000376707 NUTM2DQ5VT03 806 aaPredicted RBP31.92■■■□□ 2.7
VSX1-201ENST00000376707 TBX22Q9Y458 520 aa31.9■■■□□ 2.7
VSX1-201ENST00000376707 FAM135BQ49AJ0 1406 aa31.88■■■□□ 2.69
VSX1-201ENST00000376707 MSH6P52701 1360 aa31.86■■■□□ 2.69
VSX1-201ENST00000376707 NAIPQ13075 1403 aa31.84■■■□□ 2.69
VSX1-201ENST00000376707 PHF23Q9BUL5 403 aaPredicted RBP31.84■■■□□ 2.69
VSX1-201ENST00000376707 ADAMTS13Q76LX8 1427 aa31.83■■■□□ 2.69
VSX1-201ENST00000376707 CHD2O14647 1828 aaKnown RBP31.82■■■□□ 2.68
VSX1-201ENST00000376707 DIP2AQ14689 1571 aa31.81■■■□□ 2.68
VSX1-201ENST00000376707 SPHKAPQ2M3C7 1700 aa31.81■■■□□ 2.68
VSX1-201ENST00000376707 ZNF326Q5BKZ1 582 aaKnown RBP31.78■■■□□ 2.68
VSX1-201ENST00000376707 PIK3R4Q99570 1358 aa31.78■■■□□ 2.68
VSX1-201ENST00000376707 ROBO1Q9Y6N7 1651 aa31.76■■■□□ 2.67
VSX1-201ENST00000376707 C14orf37Q86TY3 774 aa31.75■■■□□ 2.67
VSX1-201ENST00000376707 SLAIN2Q9P270 581 aa31.75■■■□□ 2.67
VSX1-201ENST00000376707 TRIM52Q96A61 297 aa31.74■■■□□ 2.67
VSX1-201ENST00000376707 TRPM2O94759 1503 aa31.74■■■□□ 2.67
VSX1-201ENST00000376707 HFM1A2PYH4 1435 aa31.74■■■□□ 2.67
VSX1-201ENST00000376707 NCOA3Q9Y6Q9 1424 aa31.74■■■□□ 2.67
VSX1-201ENST00000376707 AMOTL2Q9Y2J4 779 aa31.7■■■□□ 2.67
VSX1-201ENST00000376707 CLTCL1P53675 1640 aa31.68■■■□□ 2.66
VSX1-201ENST00000376707 PTPRUQ92729 1446 aa31.66■■■□□ 2.66
VSX1-201ENST00000376707 SETBP1Q9Y6X0 1596 aa31.65■■■□□ 2.66
VSX1-201ENST00000376707 C19orf44Q9H6X5 657 aa31.65■■■□□ 2.66
VSX1-201ENST00000376707 ATF3P18847 181 aa31.63■■■□□ 2.65
VSX1-201ENST00000376707 CADPS2Q86UW7 1296 aa31.63■■■□□ 2.65
VSX1-201ENST00000376707 SLC4A1APQ9BWU0 796 aaKnown RBP31.63■■■□□ 2.65
VSX1-201ENST00000376707 NRXN3Q9Y4C0 1643 aa31.63■■■□□ 2.65
VSX1-201ENST00000376707 NEXMIFQ5QGS0 1516 aa31.6■■■□□ 2.65
VSX1-201ENST00000376707 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.58■■■□□ 2.65
VSX1-201ENST00000376707 METP08581 1390 aa31.57■■■□□ 2.64
VSX1-201ENST00000376707 KIF1BO60333 1816 aa31.57■■■□□ 2.64
VSX1-201ENST00000376707 PHLPP1O60346 1717 aa31.57■■■□□ 2.64
VSX1-201ENST00000376707 XRN1Q8IZH2 1706 aaKnown RBP31.55■■■□□ 2.64
VSX1-201ENST00000376707 JCADQ9P266 1359 aa31.53■■■□□ 2.64
VSX1-201ENST00000376707 RGS17Q9UGC6 210 aaPredicted RBP31.52■■■□□ 2.64
VSX1-201ENST00000376707 VGFO15240 615 aaPredicted RBP31.51■■■□□ 2.63
VSX1-201ENST00000376707 DCCP43146 1447 aa31.49■■■□□ 2.63
VSX1-201ENST00000376707 RPGRIP1LQ68CZ1 1315 aa31.48■■■□□ 2.63
VSX1-201ENST00000376707 COL16A1Q07092 1604 aaPredicted RBP31.47■■■□□ 2.63
VSX1-201ENST00000376707 FOXD1Q16676 465 aa31.46■■■□□ 2.63
VSX1-201ENST00000376707 BRINP3Q76B58 766 aa31.44■■■□□ 2.62
VSX1-201ENST00000376707 AHDC1Q5TGY3 1603 aaPredicted RBP31.43■■■□□ 2.62
VSX1-201ENST00000376707 ADGRL3Q9HAR2 1447 aa31.41■■■□□ 2.62
VSX1-201ENST00000376707 MPHOSPH9Q99550 1183 aa31.39■■■□□ 2.62
VSX1-201ENST00000376707 CCDC144AA2RUR9 1427 aa31.39■■■□□ 2.62
VSX1-201ENST00000376707 MST1RQ04912 1400 aa31.39■■■□□ 2.62
VSX1-201ENST00000376707 SPATA31A6Q5VVP1 1343 aa31.38■■■□□ 2.61
VSX1-201ENST00000376707 POTEAQ6S8J7 498 aa31.37■■■□□ 2.61
VSX1-201ENST00000376707 ASXL1Q8IXJ9 1541 aa31.35■■■□□ 2.61
VSX1-201ENST00000376707 PTCH1Q13635 1447 aa31.35■■■□□ 2.61
VSX1-201ENST00000376707 PPLO60437 1756 aa31.34■■■□□ 2.61
VSX1-201ENST00000376707 SETD1AO15047 1707 aaKnown RBP31.33■■■□□ 2.61
VSX1-201ENST00000376707 NALCNQ8IZF0 1738 aa31.32■■■□□ 2.6
VSX1-201ENST00000376707 ROBO2Q9HCK4 1378 aa31.31■■■□□ 2.6
VSX1-201ENST00000376707 RGL3Q3MIN7 710 aa31.31■■■□□ 2.6
VSX1-201ENST00000376707 MEX3CQ5U5Q3 659 aaKnown RBP31.31■■■□□ 2.6
VSX1-201ENST00000376707 ACIN1Q9UKV3 1341 aaKnown RBP31.3■■■□□ 2.6
VSX1-201ENST00000376707 LRP6O75581 1613 aa31.29■■■□□ 2.6
VSX1-201ENST00000376707 SHPRHQ149N8 1683 aa31.29■■■□□ 2.6
VSX1-201ENST00000376707 PRAG1Q86YV5 1406 aa31.28■■■□□ 2.6
VSX1-201ENST00000376707 ADGRF5Q8IZF2 1346 aa31.26■■■□□ 2.6
VSX1-201ENST00000376707 SPATA31E1Q6ZUB1 1445 aa31.26■■■□□ 2.6
VSX1-201ENST00000376707 SETD5Q9C0A6 1442 aa31.26■■■□□ 2.6
VSX1-201ENST00000376707 ANKRD30BQ9BXX2 1392 aa31.25■■■□□ 2.59
VSX1-201ENST00000376707 NHSL1Q5SYE7 1610 aa31.24■■■□□ 2.59
VSX1-201ENST00000376707 C1orf167Q5SNV9 1468 aa31.23■■■□□ 2.59
VSX1-201ENST00000376707 LRRC59Q96AG4 307 aaKnown RBP31.23■■■□□ 2.59
VSX1-201ENST00000376707 NUTM2BA6NNL0 878 aaPredicted RBP31.22■■■□□ 2.59
VSX1-201ENST00000376707 NUTM2EB1AL46 878 aaPredicted RBP31.22■■■□□ 2.59
VSX1-201ENST00000376707 NUTM2AQ8IVF1 878 aaPredicted RBP31.22■■■□□ 2.59
VSX1-201ENST00000376707 DDX17Q92841 729 aaKnown RBP31.22■■■□□ 2.59
VSX1-201ENST00000376707 ZNF772Q68DY9 489 aaPredicted RBP31.18■■■□□ 2.58
VSX1-201ENST00000376707 STK26Q9P289 416 aa31.16■■■□□ 2.58
VSX1-201ENST00000376707 ORAI2Q96SN7 254 aa31.15■■■□□ 2.58
VSX1-201ENST00000376707 IFT172Q9UG01 1749 aa31.15■■■□□ 2.58
VSX1-201ENST00000376707 RAB3GAP2Q9H2M9 1393 aa31.14■■■□□ 2.58
VSX1-201ENST00000376707 LRPPRCP42704 1394 aaKnown RBP31.12■■■□□ 2.57
VSX1-201ENST00000376707 PNPLA6Q8IY17 1366 aa31.12■■■□□ 2.57
VSX1-201ENST00000376707 PIK3C2GO75747 1445 aa31.12■■■□□ 2.57
VSX1-201ENST00000376707 TMEM132EQ6IEE7 984 aa31.11■■■□□ 2.57
VSX1-201ENST00000376707 TECPR2O15040 1411 aa31.1■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms