RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 CHGAP10645 457 aaKnown RBP32.11■■■□□ 2.73
NEDD8-201ENST00000250495 PROSER2Q86WR7 435 aaPredicted RBP32.11■■■□□ 2.73
NEDD8-201ENST00000250495 XIRP1Q702N8 1843 aaKnown RBP32.1■■■□□ 2.73
NEDD8-201ENST00000250495 IQGAP3Q86VI3 1631 aa32.1■■■□□ 2.73
NEDD8-201ENST00000250495 ZFYVE9O95405 1425 aa32.09■■■□□ 2.73
NEDD8-201ENST00000250495 RIMS2Q9UQ26 1411 aa32.09■■■□□ 2.73
NEDD8-201ENST00000250495 TMEM94Q12767 1356 aa32.09■■■□□ 2.73
NEDD8-201ENST00000250495 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.09■■■□□ 2.73
NEDD8-201ENST00000250495 E9PCH4 1651 aa32.08■■■□□ 2.73
NEDD8-201ENST00000250495 TMEM131LA2VDJ0 1609 aa32.08■■■□□ 2.73
NEDD8-201ENST00000250495 MYO5BQ9ULV0 1848 aa32.08■■■□□ 2.73
NEDD8-201ENST00000250495 PLEKHG1Q9ULL1 1385 aa32.07■■■□□ 2.73
NEDD8-201ENST00000250495 SENP3Q9H4L4 574 aaPredicted RBP32.07■■■□□ 2.72
NEDD8-201ENST00000250495 MED1Q15648 1581 aaPredicted RBP32.04■■■□□ 2.72
NEDD8-201ENST00000250495 TBX22Q9Y458 520 aa32.01■■■□□ 2.71
NEDD8-201ENST00000250495 NKTRP30414 1462 aaKnown RBP32.01■■■□□ 2.71
NEDD8-201ENST00000250495 RBM33Q96EV2 1170 aaKnown RBP31.99■■■□□ 2.71
NEDD8-201ENST00000250495 FAM135BQ49AJ0 1406 aa31.99■■■□□ 2.71
NEDD8-201ENST00000250495 NWD1Q149M9 1564 aa31.98■■■□□ 2.71
NEDD8-201ENST00000250495 RRBP1Q9P2E9 1410 aaKnown RBP31.96■■■□□ 2.71
NEDD8-201ENST00000250495 NUTM2DQ5VT03 806 aaPredicted RBP31.95■■■□□ 2.71
NEDD8-201ENST00000250495 PHF23Q9BUL5 403 aaPredicted RBP31.95■■■□□ 2.71
NEDD8-201ENST00000250495 CHD2O14647 1828 aaKnown RBP31.94■■■□□ 2.7
NEDD8-201ENST00000250495 MSH6P52701 1360 aa31.93■■■□□ 2.7
NEDD8-201ENST00000250495 ADAMTS13Q76LX8 1427 aa31.87■■■□□ 2.69
NEDD8-201ENST00000250495 PIK3R4Q99570 1358 aa31.87■■■□□ 2.69
NEDD8-201ENST00000250495 SLAIN2Q9P270 581 aa31.86■■■□□ 2.69
NEDD8-201ENST00000250495 DIP2AQ14689 1571 aa31.85■■■□□ 2.69
NEDD8-201ENST00000250495 NCOA3Q9Y6Q9 1424 aa31.84■■■□□ 2.69
NEDD8-201ENST00000250495 NAIPQ13075 1403 aa31.83■■■□□ 2.69
NEDD8-201ENST00000250495 SPHKAPQ2M3C7 1700 aa31.83■■■□□ 2.69
NEDD8-201ENST00000250495 ZNF326Q5BKZ1 582 aaKnown RBP31.82■■■□□ 2.68
NEDD8-201ENST00000250495 ROBO1Q9Y6N7 1651 aa31.82■■■□□ 2.68
NEDD8-201ENST00000250495 C14orf37Q86TY3 774 aa31.81■■■□□ 2.68
NEDD8-201ENST00000250495 AMOTL2Q9Y2J4 779 aa31.78■■■□□ 2.68
NEDD8-201ENST00000250495 TRPM2O94759 1503 aa31.76■■■□□ 2.68
NEDD8-201ENST00000250495 TRIM52Q96A61 297 aa31.76■■■□□ 2.67
NEDD8-201ENST00000250495 C19orf44Q9H6X5 657 aa31.76■■■□□ 2.67
NEDD8-201ENST00000250495 CADPS2Q86UW7 1296 aa31.74■■■□□ 2.67
NEDD8-201ENST00000250495 ATF3P18847 181 aa31.72■■■□□ 2.67
NEDD8-201ENST00000250495 HFM1A2PYH4 1435 aa31.72■■■□□ 2.67
NEDD8-201ENST00000250495 PTPRUQ92729 1446 aa31.69■■■□□ 2.66
NEDD8-201ENST00000250495 SETBP1Q9Y6X0 1596 aa31.68■■■□□ 2.66
NEDD8-201ENST00000250495 CLTCL1P53675 1640 aa31.67■■■□□ 2.66
NEDD8-201ENST00000250495 SLC4A1APQ9BWU0 796 aaKnown RBP31.66■■■□□ 2.66
NEDD8-201ENST00000250495 RGS17Q9UGC6 210 aaPredicted RBP31.65■■■□□ 2.66
NEDD8-201ENST00000250495 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.65■■■□□ 2.66
NEDD8-201ENST00000250495 KIF1BO60333 1816 aa31.65■■■□□ 2.66
NEDD8-201ENST00000250495 NRXN3Q9Y4C0 1643 aa31.64■■■□□ 2.66
NEDD8-201ENST00000250495 PHLPP1O60346 1717 aa31.64■■■□□ 2.66
NEDD8-201ENST00000250495 JCADQ9P266 1359 aa31.62■■■□□ 2.65
NEDD8-201ENST00000250495 NEXMIFQ5QGS0 1516 aa31.61■■■□□ 2.65
NEDD8-201ENST00000250495 METP08581 1390 aa31.6■■■□□ 2.65
NEDD8-201ENST00000250495 VGFO15240 615 aaPredicted RBP31.6■■■□□ 2.65
NEDD8-201ENST00000250495 XRN1Q8IZH2 1706 aaKnown RBP31.57■■■□□ 2.64
NEDD8-201ENST00000250495 RPGRIP1LQ68CZ1 1315 aa31.56■■■□□ 2.64
NEDD8-201ENST00000250495 DCCP43146 1447 aa31.56■■■□□ 2.64
NEDD8-201ENST00000250495 COL16A1Q07092 1604 aaPredicted RBP31.52■■■□□ 2.64
NEDD8-201ENST00000250495 BRINP3Q76B58 766 aa31.51■■■□□ 2.63
NEDD8-201ENST00000250495 AHDC1Q5TGY3 1603 aaPredicted RBP31.49■■■□□ 2.63
NEDD8-201ENST00000250495 POTEAQ6S8J7 498 aa31.48■■■□□ 2.63
NEDD8-201ENST00000250495 SPATA31A6Q5VVP1 1343 aa31.48■■■□□ 2.63
NEDD8-201ENST00000250495 FOXD1Q16676 465 aa31.45■■■□□ 2.63
NEDD8-201ENST00000250495 ADGRL3Q9HAR2 1447 aa31.44■■■□□ 2.62
NEDD8-201ENST00000250495 MST1RQ04912 1400 aa31.43■■■□□ 2.62
NEDD8-201ENST00000250495 MPHOSPH9Q99550 1183 aa31.43■■■□□ 2.62
NEDD8-201ENST00000250495 ACIN1Q9UKV3 1341 aaKnown RBP31.41■■■□□ 2.62
NEDD8-201ENST00000250495 MEX3CQ5U5Q3 659 aaKnown RBP31.39■■■□□ 2.62
NEDD8-201ENST00000250495 CCDC144AA2RUR9 1427 aa31.39■■■□□ 2.62
NEDD8-201ENST00000250495 ASXL1Q8IXJ9 1541 aa31.38■■■□□ 2.61
NEDD8-201ENST00000250495 PPLO60437 1756 aa31.38■■■□□ 2.61
NEDD8-201ENST00000250495 PTCH1Q13635 1447 aa31.37■■■□□ 2.61
NEDD8-201ENST00000250495 SHPRHQ149N8 1683 aa31.36■■■□□ 2.61
NEDD8-201ENST00000250495 SETD1AO15047 1707 aaKnown RBP31.35■■■□□ 2.61
NEDD8-201ENST00000250495 LRRC59Q96AG4 307 aaKnown RBP31.35■■■□□ 2.61
NEDD8-201ENST00000250495 ROBO2Q9HCK4 1378 aa31.34■■■□□ 2.61
NEDD8-201ENST00000250495 RGL3Q3MIN7 710 aa31.34■■■□□ 2.61
NEDD8-201ENST00000250495 NALCNQ8IZF0 1738 aa31.33■■■□□ 2.61
NEDD8-201ENST00000250495 LRP6O75581 1613 aa31.33■■■□□ 2.61
NEDD8-201ENST00000250495 SETD5Q9C0A6 1442 aa31.32■■■□□ 2.61
NEDD8-201ENST00000250495 ZNF772Q68DY9 489 aaPredicted RBP31.32■■■□□ 2.6
NEDD8-201ENST00000250495 PRAG1Q86YV5 1406 aa31.32■■■□□ 2.6
NEDD8-201ENST00000250495 ADGRF5Q8IZF2 1346 aa31.29■■■□□ 2.6
NEDD8-201ENST00000250495 NHSL1Q5SYE7 1610 aa31.29■■■□□ 2.6
NEDD8-201ENST00000250495 NUTM2BA6NNL0 878 aaPredicted RBP31.29■■■□□ 2.6
NEDD8-201ENST00000250495 NUTM2EB1AL46 878 aaPredicted RBP31.29■■■□□ 2.6
NEDD8-201ENST00000250495 NUTM2AQ8IVF1 878 aaPredicted RBP31.29■■■□□ 2.6
NEDD8-201ENST00000250495 ANKRD30BQ9BXX2 1392 aa31.29■■■□□ 2.6
NEDD8-201ENST00000250495 C1orf167Q5SNV9 1468 aa31.28■■■□□ 2.6
NEDD8-201ENST00000250495 SPATA31E1Q6ZUB1 1445 aa31.28■■■□□ 2.6
NEDD8-201ENST00000250495 DDX17Q92841 729 aaKnown RBP31.26■■■□□ 2.59
NEDD8-201ENST00000250495 ORAI2Q96SN7 254 aa31.22■■■□□ 2.59
NEDD8-201ENST00000250495 STK26Q9P289 416 aa31.19■■■□□ 2.58
NEDD8-201ENST00000250495 PNPLA6Q8IY17 1366 aa31.17■■■□□ 2.58
NEDD8-201ENST00000250495 IFT172Q9UG01 1749 aa31.17■■■□□ 2.58
NEDD8-201ENST00000250495 SOS2Q07890 1332 aaPredicted RBP31.16■■■□□ 2.58
NEDD8-201ENST00000250495 LRPPRCP42704 1394 aaKnown RBP31.16■■■□□ 2.58
NEDD8-201ENST00000250495 TMEM132EQ6IEE7 984 aa31.15■■■□□ 2.58
NEDD8-201ENST00000250495 ABCC11Q96J66 1382 aa31.15■■■□□ 2.58
NEDD8-201ENST00000250495 RXRBP28702 533 aa31.14■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms