RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SRFP11831 508 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 GAP43P17677 238 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 NMT1P30419 496 aaKnown RBP20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 TCF15Q12870 199 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 HTR4Q13639 388 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 ENOX2Q16206 610 aaKnown RBP20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 CTXN3Q4LDR2 81 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 SPECC1Q5M775 1068 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 MTSS1LQ765P7 747 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 ZNF720Q7Z2F6 126 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 TCEAL8Q8IYN2 117 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 RSAD2Q8WXG1 361 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 DDX12PQ92771 950 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 SNX21Q969T3 373 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 AVENQ9NQS1 362 aaPredicted RBP20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 TUBGCP4Q9UGJ1 667 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 CPSF3Q9UKF6 684 aaKnown RBP20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 DERAQ9Y315 318 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 STYXL1Q9Y6J8 313 aa20.74■□□□□ 0.91
CCDC28A-203ENST00000617445 PRRG1O14668 218 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 GALR2O43603 387 aaPredicted RBP20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 LRG1P02750 347 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 TNFSF9P41273 254 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 CEBPZQ03701 1054 aaKnown RBP20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 POSTNQ15063 836 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 PABPC1LQ4VXU2 614 aaKnown RBP20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 FAM173BQ6P4H8 233 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 FGF13Q92913 245 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 CLIC6Q96NY7 704 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 USP28Q96RU2 1077 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 RTP3Q9BQQ7 232 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 ASB7Q9H672 318 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 FBXL5Q9UKA1 691 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 NOTCH4Q99466 2003 aa20.73■□□□□ 0.91
CCDC28A-203ENST00000617445 WDR27A2RRH5 827 aa20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 OAZ2O95190 189 aa20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 PTPN2P17706 415 aa20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 NASPP49321 788 aaPredicted RBP20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 AARSP49588 968 aaKnown RBP eCLIP20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 SPATA1Q5VX52 437 aa20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 SLC39A4Q6P5W5 647 aa20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 DYMQ7RTS9 669 aa20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 ALYREFQ86V81 257 aaKnown RBP20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 BEST2Q8NFU1 509 aa20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 SLC2A4RGQ9NR83 387 aa20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 DNMT3BQ9UBC3 853 aaKnown RBP20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 AFF4Q9UHB7 1163 aaKnown RBP20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 EXOC7Q9UPT5 735 aa20.72■□□□□ 0.91
CCDC28A-203ENST00000617445 NARSO43776 548 aaKnown RBP20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 MRE11P49959 708 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 NTHL1P78549 312 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 YWHAHQ04917 246 aaPredicted RBP20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 SPAG1Q07617 926 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 ZC2HC1CQ53FD0 456 aaPredicted RBP20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 ZBTB41Q5SVQ8 909 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 ADALQ6DHV7 355 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 SFR1Q86XK3 245 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 SIX5Q8N196 739 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 TMEM105Q8N8V8 129 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 FLCNQ8NFG4 579 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 DNAJC19Q96DA6 116 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 ZNF396Q96N95 335 aaPredicted RBP20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 MRPL44Q9H9J2 332 aaKnown RBP20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 CYP4F11Q9HBI6 524 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 GDE1Q9NZC3 331 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 AGO2Q9UKV8 859 aaKnown RBP20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 NUMBLQ9Y6R0 609 aa20.71■□□□□ 0.91
CCDC28A-203ENST00000617445 MYMKA6NI61 221 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 ANKRD63C9JTQ0 380 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 PPP1R37O75864 691 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 MICAL2O94851 1124 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 NPR3P17342 541 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 AOC1P19801 751 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 STAT6P42226 847 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 ARPP19P56211 112 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 ALCAMQ13740 583 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 STK38Q15208 465 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 USP37Q86T82 979 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 ELMOD1Q8N336 334 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 ITFG1Q8TB96 612 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 FAM212AQ96EL1 285 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 STRA6Q9BX79 667 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 OLFML3Q9NRN5 406 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 FOXD4L1Q9NU39 408 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 MRPS23Q9Y3D9 190 aaKnown RBP20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 C2CD2Q9Y426 696 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 PCDHB13Q9Y5F0 798 aa20.7■□□□□ 0.9
CCDC28A-203ENST00000617445 OR6C75A6NL08 312 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 ZNF197O14709 1029 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 PPP6R2O75170 966 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 RHOP08100 348 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 CFHP08603 1231 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 TYMPP19971 482 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 TMEM132DQ14C87 1099 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 JADE1Q6IE81 842 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 DSTYKQ6XUX3 929 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 NT5DC4Q86YG4 428 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 LINC00301Q8NCQ3 95 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 ACCSQ96QU6 501 aa20.69■□□□□ 0.9
CCDC28A-203ENST00000617445 LRRC27Q9C0I9 530 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms