RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 SUSD3Q96L08 255 aa21.83■■□□□ 1.09
SS18-218ENST00000581021 ASB7Q9H672 318 aa21.83■■□□□ 1.09
SS18-218ENST00000581021 MAN1C1Q9NR34 630 aa21.83■■□□□ 1.09
SS18-218ENST00000581021 EXOC1Q9NV70 894 aa21.83■■□□□ 1.09
SS18-218ENST00000581021 DZANK1Q9NVP4 752 aa21.83■■□□□ 1.09
SS18-218ENST00000581021 MTRRQ9UBK8 725 aa21.83■■□□□ 1.09
SS18-218ENST00000581021 DERAQ9Y315 318 aa21.83■■□□□ 1.09
SS18-218ENST00000581021 C2CD2Q9Y426 696 aa21.83■■□□□ 1.09
SS18-218ENST00000581021 SPTLC1O15269 473 aa21.82■■□□□ 1.08
SS18-218ENST00000581021 GLUD1P00367 558 aa21.82■■□□□ 1.08
SS18-218ENST00000581021 MYL1P05976 194 aa21.82■■□□□ 1.08
SS18-218ENST00000581021 MCM4P33991 863 aa21.82■■□□□ 1.08
SS18-218ENST00000581021 KHSRPQ92945 711 aaKnown RBP eCLIP21.82■■□□□ 1.083e-7■■■■□ 19.3
SS18-218ENST00000581021 TSPAN18Q96SJ8 248 aa21.82■■□□□ 1.08
SS18-218ENST00000581021 ADAM7Q9H2U9 754 aa21.82■■□□□ 1.08
SS18-218ENST00000581021 RBAKQ9NYW8 714 aaPredicted RBP21.82■■□□□ 1.08
SS18-218ENST00000581021 HSPBP1Q9NZL4 362 aa21.82■■□□□ 1.08
SS18-218ENST00000581021 NUB1Q9Y5A7 615 aa21.82■■□□□ 1.08
SS18-218ENST00000581021 PTPRJQ12913 1337 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 ANO9A1A5B4 782 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 C19orf67A6NJJ6 358 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 CLIC2O15247 247 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 GADD45BO75293 160 aaPredicted RBP21.81■■□□□ 1.08
SS18-218ENST00000581021 ANP32AP39687 249 aaKnown RBP21.81■■□□□ 1.08
SS18-218ENST00000581021 VARS2Q5ST30 1063 aaKnown RBP21.81■■□□□ 1.08
SS18-218ENST00000581021 C9orf57Q5W0N0 161 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 TMC5Q6UXY8 1006 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 ADHFE1Q8IWW8 467 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 GPD1LQ8N335 351 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 BEST2Q8NFU1 509 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 NOC3LQ8WTT2 800 aaKnown RBP21.81■■□□□ 1.08
SS18-218ENST00000581021 PDE11AQ9HCR9 933 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 FAM50BQ9Y247 325 aa21.81■■□□□ 1.08
SS18-218ENST00000581021 TNFRSF10AO00220 468 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 PIRO00625 290 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 TRAPPC3O43617 180 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 TBC1D4O60343 1298 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 RFPL2O75678 378 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 IL18RAPO95256 599 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 CREMQ03060 361 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 MRPL58Q14197 206 aaKnown RBP21.8■■□□□ 1.08
SS18-218ENST00000581021 CBX2Q14781 532 aaPredicted RBP21.8■■□□□ 1.08
SS18-218ENST00000581021 KNOP1Q1ED39 458 aaKnown RBP21.8■■□□□ 1.08
SS18-218ENST00000581021 CXorf38Q8TB03 319 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 SFXN1Q9H9B4 322 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 PRKAG3Q9UGI9 489 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 BACE2Q9Y5Z0 518 aa21.8■■□□□ 1.08
SS18-218ENST00000581021 M0QZQ0 153 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 SYN3O14994 580 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 XPOTO43592 962 aaKnown RBP21.79■■□□□ 1.08
SS18-218ENST00000581021 RHOBTB3O94955 611 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 LDHAP00338 332 aaKnown RBP21.79■■□□□ 1.08
SS18-218ENST00000581021 CYP2J2P51589 502 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 FAM160A1Q05DH4 1040 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 PNOCQ13519 176 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 GZF1Q9H116 711 aaPredicted RBP21.79■■□□□ 1.08
SS18-218ENST00000581021 KCTD10Q9H3F6 313 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 POMKQ9H5K3 350 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 DPP3Q9NY33 737 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 CHMP5Q9NZZ3 219 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 FBXW11Q9UKB1 542 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 PCDHB8Q9UN66 801 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 TIMM13Q9Y5L4 95 aaPredicted RBP21.79■■□□□ 1.08
SS18-218ENST00000581021 CDY1Q9Y6F8 540 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 SCN1AP35498 2009 aa21.79■■□□□ 1.08
SS18-218ENST00000581021 TSC2P49815 1807 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 OR1D2P34982 312 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 LILRA4P59901 499 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 ITIH3Q06033 890 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 PSMD2Q13200 908 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 RAB33AQ14088 237 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 LMBRD2Q68DH5 695 aaPredicted RBP21.78■■□□□ 1.08
SS18-218ENST00000581021 ANKS3Q6ZW76 656 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 GJD3Q8N144 294 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 C1orf127Q8N9H9 656 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 ERCC4Q92889 916 aaPredicted RBP21.78■■□□□ 1.08
SS18-218ENST00000581021 ZNF707Q96C28 371 aaPredicted RBP21.78■■□□□ 1.08
SS18-218ENST00000581021 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.78■■□□□ 1.08
SS18-218ENST00000581021 C2orf16Q68DN1 1984 aa21.78■■□□□ 1.08
SS18-218ENST00000581021 GOLGA6L4A6NEF3 574 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 KIAA0391O15091 583 aaKnown RBP21.77■■□□□ 1.08
SS18-218ENST00000581021 PAPLNO95428 1278 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 C1RP00736 705 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 TFAMQ00059 246 aaKnown RBP21.77■■□□□ 1.08
SS18-218ENST00000581021 SNRNP35Q16560 246 aaKnown RBP21.77■■□□□ 1.08
SS18-218ENST00000581021 SLC8B1Q6J4K2 584 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 PDXDC1Q6P996 788 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 GPR149Q86SP6 731 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 C12orf56Q8IXR9 622 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 KREMEN2Q8NCW0 462 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 OR5B17Q8NGF7 314 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 PHF7Q9BWX1 381 aaPredicted RBP21.77■■□□□ 1.08
SS18-218ENST00000581021 MTMR12Q9C0I1 747 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 FBXL5Q9UKA1 691 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 DENND4AQ7Z401 1863 aa21.77■■□□□ 1.08
SS18-218ENST00000581021 LOC730098B7Z3J9 87 aa21.76■■□□□ 1.07
SS18-218ENST00000581021 TULP1O00294 542 aaPredicted RBP21.76■■□□□ 1.07
SS18-218ENST00000581021 SP100P23497 879 aaPredicted RBP21.76■■□□□ 1.07
SS18-218ENST00000581021 ROR1Q01973 937 aa21.76■■□□□ 1.07
SS18-218ENST00000581021 HS2ST1Q7LGA3 356 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms