RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CLSTN3Q9BQT9 956 aa10□□□□□ -0.81
VPS35-206ENST00000565228 COLEC11Q9BWP8 271 aa10□□□□□ -0.81
VPS35-206ENST00000565228 MTMR12Q9C0I1 747 aa10□□□□□ -0.81
VPS35-206ENST00000565228 S1PR5Q9H228 398 aa10□□□□□ -0.81
VPS35-206ENST00000565228 TLE6Q9H808 572 aa10□□□□□ -0.81
VPS35-206ENST00000565228 UBE2ZQ9H832 354 aaPredicted RBP10□□□□□ -0.81
VPS35-206ENST00000565228 RXFP1Q9HBX9 757 aa10□□□□□ -0.81
VPS35-206ENST00000565228 ENTPD7Q9NQZ7 604 aa10□□□□□ -0.81
VPS35-206ENST00000565228 RBAKQ9NYW8 714 aaPredicted RBP10□□□□□ -0.81
VPS35-206ENST00000565228 TIMM13Q9Y5L4 95 aaPredicted RBP10□□□□□ -0.81
VPS35-206ENST00000565228 HCFC2Q9Y5Z7 792 aa10□□□□□ -0.81
VPS35-206ENST00000565228 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 LRRIQ3A6PVS8 624 aaPredicted RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 PDXKO00764 312 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 NRG2O14511 850 aaPredicted RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 TADA2AO75478 443 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 NR3C1P04150 777 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 SPATA31D3P0C874 917 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 CYP3A5P20815 502 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 MCCD1P59942 119 aaPredicted RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 KRT17Q04695 432 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 SMC1AQ14683 1233 aaKnown RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 TMEM132DQ14C87 1099 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 CLUL1Q15846 466 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 SNRNP35Q16560 246 aaKnown RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 CCDC142Q17RM4 750 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 COBLL1Q53SF7 1204 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 ZNF658Q5TYW1 1059 aaPredicted RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 ANKRD40Q6AI12 368 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 CENPPQ6IPU0 288 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 LILRA6Q6PI73 481 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 SPATA31D4Q6ZUB0 917 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 SLC9A9Q8IVB4 645 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 GLYCTKQ8IVS8 523 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 EFHBQ8N7U6 833 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 NOC3LQ8WTT2 800 aaKnown RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 RIN2Q8WYP3 895 aaPredicted RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 SMARCE1Q969G3 411 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 PABPC5Q96DU9 382 aaKnown RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 SUSD3Q96L08 255 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 NECAB3Q96P71 396 aaPredicted RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 GSDMAQ96QA5 445 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 APOL5Q9BWW9 433 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 CLSTN2Q9H4D0 955 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 ASB7Q9H672 318 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 NGRNQ9NPE2 291 aaKnown RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 DPP3Q9NY33 737 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 CLDND1Q9NY35 253 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 UBQLN1Q9UMX0 589 aaKnown RBP9.99□□□□□ -0.81
VPS35-206ENST00000565228 SSUH2Q9Y2M2 353 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 C2CD2Q9Y426 696 aa9.99□□□□□ -0.81
VPS35-206ENST00000565228 M0QZQ0 153 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 KINO60870 393 aaKnown RBP9.98□□□□□ -0.81
VPS35-206ENST00000565228 VNN1O95497 513 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 ITGB3P05106 788 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 WEE2P0C1S8 567 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 BMP1P13497 986 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 IL9P15248 144 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 KCNA5P22460 613 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 POLR2BP30876 1174 aaKnown RBP9.98□□□□□ -0.81
VPS35-206ENST00000565228 RPL9P32969 192 aaKnown RBP9.98□□□□□ -0.81
VPS35-206ENST00000565228 ABCD1P33897 745 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 GLUD2P49448 558 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 CLCN4P51793 760 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 LILRA4P59901 499 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 CLDN10P78369 228 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 TFAMQ00059 246 aaKnown RBP9.98□□□□□ -0.81
VPS35-206ENST00000565228 POU5F1Q01860 360 aaKnown RBP9.98□□□□□ -0.81
VPS35-206ENST00000565228 PSMD6Q15008 389 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 SKIV2LQ15477 1246 aaKnown RBP9.98□□□□□ -0.81
VPS35-206ENST00000565228 TMEM184AQ6ZMB5 413 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 APBB1IPQ7Z5R6 666 aaPredicted RBP9.98□□□□□ -0.81
VPS35-206ENST00000565228 OSTM1Q86WC4 334 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 CD302Q8IX05 232 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 XXYLT1Q8NBI6 393 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 PARD3BQ8TEW8 1205 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 PIK3R5Q8WYR1 880 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 CCDC127Q96BQ5 260 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 CRISPLD1Q9H336 500 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 CD320Q9NPF0 282 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 INTS13Q9NVM9 706 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 KIAA1468Q9P260 1216 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 PUF60Q9UHX1 559 aaKnown RBP9.98□□□□□ -0.81
VPS35-206ENST00000565228 DERAQ9Y315 318 aa9.98□□□□□ -0.81
VPS35-206ENST00000565228 DOCK8Q8NF50 2099 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 ZNF233A6NK53 670 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 TGM5O43548 720 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 LDHAP00338 332 aaKnown RBP9.97□□□□□ -0.81
VPS35-206ENST00000565228 C4BPAP04003 597 aaKnown RBP9.97□□□□□ -0.81
VPS35-206ENST00000565228 OR4Q2P0C623 313 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 TRIM49P0CI25 452 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 TRIM49CP0CI26 452 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 STX17P56962 302 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 PPP3CAQ08209 521 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 NFIL3Q16649 462 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 KYAT1Q16773 422 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 USP41Q3LFD5 358 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 VARS2Q5ST30 1063 aaKnown RBP9.97□□□□□ -0.81
VPS35-206ENST00000565228 TDRD10Q5VZ19 366 aaKnown RBP9.97□□□□□ -0.81
VPS35-206ENST00000565228 TTI2Q6NXR4 508 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms