RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 DR1Q01658 176 aa12.12□□□□□ -0.47
U2AF1-209ENST00000475639 PARP6Q2NL67 630 aa12.12□□□□□ -0.47
U2AF1-209ENST00000475639 TTC8Q8TAM2 541 aa12.12□□□□□ -0.47
U2AF1-209ENST00000475639 TMEM237Q96Q45 408 aa12.12□□□□□ -0.47
U2AF1-209ENST00000475639 NGRNQ9NPE2 291 aaKnown RBP12.12□□□□□ -0.47
U2AF1-209ENST00000475639 GTSE1Q9NYZ3 720 aa12.12□□□□□ -0.47
U2AF1-209ENST00000475639 MOSPD1Q9UJG1 213 aa12.12□□□□□ -0.47
U2AF1-209ENST00000475639 ATP8B3O60423 1300 aa12.12□□□□□ -0.47
U2AF1-209ENST00000475639 LMTK3Q96Q04 1460 aa12.12□□□□□ -0.47
U2AF1-209ENST00000475639 LTN1O94822 1766 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 ADAMTS3O15072 1205 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 TRAPPC10P48553 1259 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 SLC29A2Q14542 456 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 ZC2HC1CQ53FD0 456 aaPredicted RBP12.11□□□□□ -0.47
U2AF1-209ENST00000475639 RARS2Q5T160 578 aaKnown RBP12.11□□□□□ -0.47
U2AF1-209ENST00000475639 FAM47EQ6ZV65 393 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 CCNYL1Q8N7R7 359 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 EPS8L3Q8TE67 593 aaKnown RBP12.11□□□□□ -0.47
U2AF1-209ENST00000475639 DDX17Q92841 729 aaKnown RBP12.11□□□□□ -0.47
U2AF1-209ENST00000475639 OSBPL10Q9BXB5 764 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 USP40Q9NVE5 1235 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 KIAA1024Q9UPX6 916 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 PCDHA1Q9Y5I3 950 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 C16orf96A6NNT2 1141 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 ACSL3O95573 720 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 PLS3P13797 630 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 MCAMP43121 646 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 PMS2P54278 862 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 INHBCP55103 352 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 DMC1Q14565 340 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 PTPRN2Q92932 1015 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 SLITRK6Q9H5Y7 841 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 ZDHHC18Q9NUE0 388 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 KBTBD4Q9NVX7 518 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 STRIP2Q9ULQ0 834 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 TOMM70O94826 608 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 CACNA2D1P54289 1103 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 POU5F1Q01860 360 aaKnown RBP12.11□□□□□ -0.47
U2AF1-209ENST00000475639 KRT39Q6A163 491 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 CGB2Q6NT52 195 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 ZNF790Q6PG37 636 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 INPP5DQ92835 1189 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 TRIM54Q9BYV2 358 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 WDR11Q9BZH6 1224 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 TMEM206Q9H813 350 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 LRFN2Q9ULH4 789 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 LRCH1Q9Y2L9 728 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 hCG_2014768A0A024R1R8 64 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 ENTPD5O75356 428 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 CIAO1O76071 339 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 RAB14P61106 215 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 FUT2Q10981 343 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 KCTD2Q14681 263 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 SURF1Q15526 300 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 SLC18A3Q16572 532 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 RGS9BPQ6ZS82 235 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 TRIM69Q86WT6 500 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 TTC13Q8NBP0 860 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 ACCSQ96QU6 501 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 TIPINQ9BVW5 301 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 LRMDAQ9H2I8 198 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 SEMA6BQ9H3T3 888 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 PKD2L2Q9NZM6 624 aa12.11□□□□□ -0.47
U2AF1-209ENST00000475639 RASA4BC9J798 803 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 RASA4O43374 803 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 PENKP01210 267 aaPredicted RBP12.1□□□□□ -0.47
U2AF1-209ENST00000475639 TNFAIP8L3Q5GJ75 292 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 COL23A1Q86Y22 540 aaPredicted RBP12.1□□□□□ -0.47
U2AF1-209ENST00000475639 HPS3Q969F9 1004 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 CFAP36Q96G28 342 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 GCNAQ96QF7 691 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 AMNQ9BXJ7 453 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 DNAJC17Q9NVM6 304 aaKnown RBP12.1□□□□□ -0.47
U2AF1-209ENST00000475639 NFAT5O94916 1531 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 MEIS1O00470 390 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 LAD1O00515 517 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 HNRNPRO43390 633 aaKnown RBP12.1□□□□□ -0.47
U2AF1-209ENST00000475639 KCNA3P22001 575 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 MAP4P27816 1152 aaKnown RBP12.1□□□□□ -0.47
U2AF1-209ENST00000475639 CIITAP33076 1130 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 MCL1Q07820 350 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 RNF219Q5W0B1 726 aaPredicted RBP12.1□□□□□ -0.47
U2AF1-209ENST00000475639 ECHDC2Q86YB7 292 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 CATSPER1Q8NEC5 780 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 IP6K1Q92551 441 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 AK8Q96MA6 479 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 STRBPQ96SI9 672 aaKnown RBP12.1□□□□□ -0.47
U2AF1-209ENST00000475639 SLX1AQ9BQ83 275 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 VPS11Q9H270 941 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 SYTL2Q9HCH5 934 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 DCDC2Q9UHG0 476 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 ADAMTS1Q9UHI8 967 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 AKAP11Q9UKA4 1901 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 SUPT3HO75486 399 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 KRT7P08729 469 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 ALDH1B1P30837 517 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 PSMD7P51665 324 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 CCNA1P78396 465 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 MAPRE2Q15555 327 aa12.1□□□□□ -0.47
U2AF1-209ENST00000475639 RHOT2Q8IXI1 618 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms