RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 DCLK3Q9C098 648 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TUFT1Q9NNX1 390 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 CDV3Q9UKY7 258 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 ADAMTS13Q76LX8 1427 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 POTEFA5A3E0 1075 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 POTECB2RU33 542 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 POTEIP0CG38 1075 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 PSMD6Q15008 389 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 ITPRIPL1Q6GPH6 555 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 POTEGQ6S5H5 508 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 POTEEQ6S8J3 1075 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 PTF1AQ7RTS3 328 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 B3GALNT2Q8NCR0 500 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 GAD1Q99259 594 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 FRMPD1Q5SYB0 1578 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3DA0A087WVF3 549 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3IA0A087WXS9 549 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3EA0A087X179 549 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3KA0A087X1G2 549 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3FA6NER0 549 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3LB9A6J9 549 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3HP0C7X1 549 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 CDC25CP30307 473 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 RGS7P49802 495 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3GQ6DHY5 549 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3CQ6IPX1 549 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 DOK6Q6PKX4 331 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 CAPN12Q6ZSI9 719 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 CD302Q8IX05 232 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TBC1D3Q8IZP1 549 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 USP38Q8NB14 1042 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 FGD4Q96M96 766 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 MFSD14AQ96MC6 490 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 CNPPD1Q9BV87 410 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 GRPEL1Q9HAV7 217 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 MYO3AQ8NEV4 1616 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 NT5C1B-RDH14C9J2C7 533 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 H3BM21 787 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 FGFR4P22455 802 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 GUCY2CP25092 1073 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 C16orf72Q14CZ0 275 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 RPS6KA1Q15418 735 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 DAB2IPQ5VWQ8 1189 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 HLA-DQA1Q5Y7H0 255 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 TMC5Q6UXY8 1006 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 PRPF39Q86UA1 669 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 RDM1Q8NG50 284 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 OR6P1Q8NGX9 317 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 SUN3Q8TAQ9 357 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 THEGQ9P2T0 379 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 SCINQ9Y6U3 715 aa9.73□□□□□ -0.85
LIMCH1-202ENST00000381753 P4HA2O15460 535 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 DUSP11O75319 330 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 FGFR1P11362 822 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 AXLP30530 894 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 TICAM2Q86XR7 235 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 ADGRF2Q8IZF7 708 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 DDX56Q9NY93 547 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 ORC4O43929 436 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 RHOBTB3O94955 611 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 ZNF202O95125 648 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 RLBP1P12271 317 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 MTHFRP42898 656 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 GCLMP48507 274 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 FAM46CQ5VWP2 391 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 UNC45BQ8IWX7 931 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 SAMD3Q8N6K7 520 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 ING5Q8WYH8 240 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 PKP3Q9Y446 797 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 RGS12O14924 1447 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 CTAGE15A4D2H0 777 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 E9PMD0 336 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 RTN3O95197 1032 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 NFATC1O95644 943 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 CTAGE8P0CG41 777 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 ACO1P21399 889 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 PPP3CCP48454 512 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 CNTN2Q02246 1040 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 NCAPHQ15003 741 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 ACOX1Q15067 660 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 SLC39A12Q504Y0 691 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 GPR158Q5T848 1215 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 CTAGE6Q86UF2 777 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 CTAGE4Q8IX94 777 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 ENAHQ8N8S7 591 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 REPS2Q8NFH8 660 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 P3H4Q92791 437 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 HLA-CQ95604 372 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 IQCDQ96DY2 449 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 NT5C1AQ9BXI3 368 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 POLR3GO15318 223 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 LGALS2P05162 132 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 PFKFB3Q16875 520 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 TREML2Q5T2D2 321 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 CLYBLQ8N0X4 340 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 KIAA1143Q96AT1 154 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 HPDLQ96IR7 371 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 CYP26B1Q9NR63 512 aa9.72□□□□□ -0.85
LIMCH1-202ENST00000381753 CRLS1Q9UJA2 301 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms