RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 CNGA2Q16280 664 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 XKR3Q5GH77 459 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 MIS18BP1Q6P0N0 1132 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 TAS1R3Q7RTX0 852 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 CCDC25Q86WR0 208 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 RELL1Q8IUW5 271 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 CCDC50Q8IVM0 306 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 RHOT1Q8IXI2 618 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-222ENST00000555774 FOXP3Q9BZS1 431 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 POLR3FQ9H1D9 316 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-222ENST00000555774 SLC40A1Q9NP59 571 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 KLC4Q9NSK0 619 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 SLC9A2Q9UBY0 812 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 SEPT9Q9UHD8 586 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-222ENST00000555774 SCINQ9Y6U3 715 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 ARID2Q68CP9 1835 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 VGLL3A8MV65 326 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 TTC4O95801 387 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 HLA-DRAP01903 254 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 IVDP26440 423 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 PIK3CAP42336 1068 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 SCTRP47872 440 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 ZNF280AP59817 542 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-222ENST00000555774 PRKCEQ02156 737 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 STRN3Q13033 797 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 CCNG2Q16589 344 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 SMYD5Q6GMV2 418 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 SLFN12LQ6IEE8 588 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 SWSAP1Q6NVH7 229 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 TRMT1LQ7Z2T5 733 aaKnown RBP14.37□□□□□ -0.11
SHMT2-222ENST00000555774 KATNAL2Q8IYT4 538 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 REPS2Q8NFH8 660 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 ZNF516Q92618 1163 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 ATG4CQ96DT6 458 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 PI4K2AQ9BTU6 479 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 AS3MTQ9HBK9 375 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 CHST7Q9NS84 486 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 DNM1LO00429 736 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 LDHAP00338 332 aaKnown RBP14.37□□□□□ -0.11
SHMT2-222ENST00000555774 ACO1P21399 889 aaKnown RBP14.37□□□□□ -0.11
SHMT2-222ENST00000555774 TBXAS1P24557 533 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-222ENST00000555774 KLF1Q13351 362 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-222ENST00000555774 GNPTABQ3T906 1256 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 ABHD15Q6UXT9 468 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 EXOC3L1Q86VI1 746 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 PHF13Q86YI8 300 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-222ENST00000555774 LRRC34Q8IZ02 419 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 IPO4Q8TEX9 1081 aaKnown RBP14.37□□□□□ -0.11
SHMT2-222ENST00000555774 PRMT1Q99873 361 aaKnown RBP14.37□□□□□ -0.11
SHMT2-222ENST00000555774 CNTN6Q9UQ52 1028 aa14.37□□□□□ -0.11
SHMT2-222ENST00000555774 UMODL1Q5DID0 1318 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 SLCO1A2P46721 670 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 MNAT1P51948 309 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 ITGA8P53708 1063 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 SOX10P56693 466 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 ACTR2P61160 394 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 XRCC4Q13426 336 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 DGKZQ13574 1117 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 CUL2Q13617 745 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 UBAP2Q5T6F2 1119 aaKnown RBP14.36□□□□□ -0.11
SHMT2-222ENST00000555774 ABRAQ8N0Z2 381 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 CCDC89Q8N998 374 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 UHMK1Q8TAS1 419 aaKnown RBP14.36□□□□□ -0.11
SHMT2-222ENST00000555774 CPA5Q8WXQ8 436 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 SCLT1Q96NL6 688 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 ANAPC5Q9UJX4 755 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 AGO2Q9UKV8 859 aaKnown RBP14.36□□□□□ -0.11
SHMT2-222ENST00000555774 NEU2Q9Y3R4 380 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 FER1L6Q2WGJ9 1857 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 TNNI1P19237 187 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 KCNA3P22001 575 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 RPS12P25398 132 aaKnown RBP14.36□□□□□ -0.11
SHMT2-222ENST00000555774 CETN2P41208 172 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 BACE1P56817 501 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 PPARDQ03181 441 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 C1QBPQ07021 282 aaKnown RBP14.36□□□□□ -0.11
SHMT2-222ENST00000555774 SNX1Q13596 522 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 TDRD10Q5VZ19 366 aaKnown RBP14.36□□□□□ -0.11
SHMT2-222ENST00000555774 PLEKHA7Q6IQ23 1121 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 CCDC60Q8IWA6 550 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-222ENST00000555774 EXD1Q8NHP7 514 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 CCHCR1Q8TD31 782 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 ARHGEF2Q92974 986 aaKnown RBP14.36□□□□□ -0.11
SHMT2-222ENST00000555774 C12orf42Q96LP6 360 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 LGALS13Q9UHV8 139 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 ADAMTS5Q9UNA0 930 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 RIPK3Q9Y572 518 aa14.36□□□□□ -0.11
SHMT2-222ENST00000555774 ZNFX1Q9P2E3 1918 aaKnown RBP14.35□□□□□ -0.11
SHMT2-222ENST00000555774 SPATA31C2B4DYI2 1134 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 ATP2A1O14983 1001 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 SUPT20HL2P0C7V6 817 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 DPEP1P16444 411 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 CHKAP35790 457 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 NOMO3P69849 1222 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 LMNB2Q03252 620 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 EMC2Q15006 297 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 SUPT20HL1Q3ZLR7 823 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 SNRNP48Q6IEG0 339 aaKnown RBP14.35□□□□□ -0.11
SHMT2-222ENST00000555774 JPH2Q9BR39 696 aaPredicted RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms