RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 CENPCQ03188 943 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 LLGL1Q15334 1064 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 FAM160B1Q5W0V3 765 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 FBXO25Q8TCJ0 367 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 PRPF31Q8WWY3 499 aaKnown RBP19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 SEPT1Q8WYJ6 367 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 NUB1Q9Y5A7 615 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 ARIH2O95376 493 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 SSTR3P32745 418 aaPredicted RBP19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 COILP38432 576 aaPredicted RBP19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 GUCY1A3Q02108 690 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 TMEM270Q6UE05 265 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 METTL7BQ6UX53 244 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 MON1BQ7L1V2 547 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 SRLQ86TD4 932 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 EFCAB13Q8IY85 973 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 BCAS4Q8TDM0 211 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 ELP3Q9H9T3 547 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 PCDHB4Q9Y5E5 795 aa19.8■□□□□ 0.76
PRPF40B-208ENST00000548436 A0A0G2JLL6 359 aaPredicted RBP19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 PODXLO00592 558 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 CLDN3O15551 220 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 CLTAP09496 248 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 TGFB3P10600 412 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 TNFSF9P41273 254 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 NSFP46459 744 aaKnown RBP19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 KCNJ1P48048 391 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 PRRT2Q7Z6L0 340 aaPredicted RBP19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 PASD1Q8IV76 773 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 OTUD5Q96G74 571 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 EPB41L4BQ9H329 900 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 MTUS1Q9ULD2 1270 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 RRP15Q9Y3B9 282 aaKnown RBP19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 MGAMO43451 1857 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 A6NNZ2 444 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 TULP2O00295 520 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 MYBL1P10243 752 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 MARK3P27448 753 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 NOP14P78316 857 aaKnown RBP19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 IRX3P78415 501 aaPredicted RBP19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 TUBB8Q3ZCM7 444 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 CLMNQ96JQ2 1002 aa19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 ASCC2Q9H1I8 757 aaPredicted RBP19.79■□□□□ 0.76
PRPF40B-208ENST00000548436 FAM189A1O60320 539 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 MSCO60682 206 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 PGK2P07205 417 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 GNA15P30679 374 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 HPDP32754 393 aaPredicted RBP19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 MKRN4PQ13434 485 aaPredicted RBP19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 SPDYCQ5MJ68 293 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 RUFY4Q6ZNE9 571 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 CCDC105Q8IYK2 499 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 ABRAQ8N0Z2 381 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 C12orf50Q8NA57 414 aaPredicted RBP19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 DCPSQ96C86 337 aaKnown RBP19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 FGD4Q96M96 766 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 CNTN6Q9UQ52 1028 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 PTPN22Q9Y2R2 807 aa19.78■□□□□ 0.76
PRPF40B-208ENST00000548436 FSCN2O14926 492 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 ZEB2O60315 1214 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 CCT5P48643 541 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 NOMO3P69849 1222 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 NCOA4Q13772 614 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 HSDL1Q3SXM5 330 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 DAB2IPQ5VWQ8 1189 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 ZPBP2Q6X784 338 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 ZBTB33Q86T24 672 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 TRIM50Q86XT4 487 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 SULF1Q8IWU6 871 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 RBBP8NLQ8NC74 664 aaPredicted RBP19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 TRIM11Q96F44 468 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 CCDC113Q9H0I3 377 aa19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 ADARB2Q9NS39 739 aaKnown RBP19.77■□□□□ 0.76
PRPF40B-208ENST00000548436 ZBTB42B2RXF5 422 aa19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 ERLIN2O94905 339 aa19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 CST3P01034 146 aaPredicted RBP19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 LSP1P33241 339 aa19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 BRSK2Q8IWQ3 736 aa19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 GPR20Q99678 358 aa19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 C11orf70Q9BRQ4 267 aa19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 LRRC19Q9H756 370 aa19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 TXNRD2Q9NNW7 524 aa19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 BCCIPQ9P287 314 aaKnown RBP eCLIP19.77■□□□□ 0.75
PRPF40B-208ENST00000548436 SRGAP2CP0DJJ0 459 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 TBXAS1P24557 533 aaPredicted RBP19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 MDH1P40925 334 aaKnown RBP19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 FNTAP49354 379 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 PMS2P54278 862 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 AGBL2Q5U5Z8 902 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 MOB2Q70IA6 237 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 C1orf54Q8WWF1 131 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 HERPUD2Q9BSE4 406 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 AZI2Q9H6S1 392 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 ANK1P16157 1881 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 EVPLQ92817 2033 aa19.76■□□□□ 0.75
PRPF40B-208ENST00000548436 SHBGP04278 402 aa19.75■□□□□ 0.75
PRPF40B-208ENST00000548436 SLC1A1P43005 524 aa19.75■□□□□ 0.75
PRPF40B-208ENST00000548436 LAMTOR4Q0VGL1 99 aa19.75■□□□□ 0.75
PRPF40B-208ENST00000548436 Q3C1V9 767 aa19.75■□□□□ 0.75
PRPF40B-208ENST00000548436 IER5Q5VY09 327 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms