RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 IFT74Q96LB3 600 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 ZNF512Q96ME7 567 aaPredicted RBP18.61■□□□□ 0.57
VPS29-204ENST00000548259 CYP4F11Q9HBI6 524 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 PIAS3Q9Y6X2 628 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 KMT2BQ9UMN6 2715 aaPredicted RBP18.61■□□□□ 0.57
VPS29-204ENST00000548259 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.6■□□□□ 0.57
VPS29-204ENST00000548259 ZNF263O14978 683 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 ATF2P15336 505 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 GDI1P31150 447 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 ROR1Q01973 937 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 SCRN1Q12765 414 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 LRRC32Q14392 662 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 UPP1Q16831 310 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 FAM78AQ5JUQ0 283 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 GLRA4Q5JXX5 417 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 TPGS2Q68CL5 300 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.6■□□□□ 0.57
VPS29-204ENST00000548259 YAF2Q8IY57 180 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 TCEAL8Q8IYN2 117 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 ERMNQ8TAM6 284 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 E2F7Q96AV8 911 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 ASB16Q96NS5 453 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 PPP1R10Q96QC0 940 aaKnown RBP18.6■□□□□ 0.57
VPS29-204ENST00000548259 ZNF334Q9HCZ1 680 aaPredicted RBP18.6■□□□□ 0.57
VPS29-204ENST00000548259 SEMA4GQ9NTN9 838 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 ORC3Q9UBD5 711 aaPredicted RBP18.6■□□□□ 0.57
VPS29-204ENST00000548259 MAFFQ9ULX9 164 aa18.6■□□□□ 0.57
VPS29-204ENST00000548259 PATJQ8NI35 1801 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 ARHGEF35A5YM69 484 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 SYN3O14994 580 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 ABLIM3O94929 683 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 ARPP19P56211 112 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 NR5A1Q13285 461 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 CSRP2Q16527 193 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 ATF7IP2Q5U623 682 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 CSGALNACT1Q8TDX6 532 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 CCDC94Q9BW85 323 aaPredicted RBP18.59■□□□□ 0.57
VPS29-204ENST00000548259 GPR88Q9GZN0 384 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 GJB4Q9NTQ9 266 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 NUB1Q9Y5A7 615 aa18.59■□□□□ 0.57
VPS29-204ENST00000548259 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.59■□□□□ 0.57
VPS29-204ENST00000548259 TDGF1P13385 188 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 CYP11B2P19099 503 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 FCARP24071 287 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 MLLT6P55198 1093 aaPredicted RBP18.58■□□□□ 0.56
VPS29-204ENST00000548259 TRIM29Q14134 588 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 EARS2Q5JPH6 523 aaKnown RBP18.58■□□□□ 0.56
VPS29-204ENST00000548259 PRSS36Q5K4E3 855 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 IL31Q6EBC2 164 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 PADI6Q6TGC4 694 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 PRR23CQ6ZRP0 262 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 MAP4K3Q8IVH8 894 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 SPEM1Q8N4L4 309 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 FAM200AQ8TCP9 573 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 SLITRK6Q9H5Y7 841 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 ASAH2Q9NR71 780 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 INSL5Q9Y5Q6 135 aa18.58■□□□□ 0.56
VPS29-204ENST00000548259 A0A087WWV3 80 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 WDR27A2RRH5 827 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 TTLL13PA6NNM8 815 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 PFKFB2O60825 505 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 KCNA4P22459 653 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 BRCC3P46736 316 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 DMWDQ09019 674 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 LONP2Q86WA8 852 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 CATSPER3Q86XQ3 398 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 ZNF687Q8N1G0 1237 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 KIFAP3Q92845 792 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 TCEAL4Q96EI5 215 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 CCDC113Q9H0I3 377 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 C8orf33Q9H7E9 229 aaPredicted RBP18.57■□□□□ 0.56
VPS29-204ENST00000548259 ARID2Q68CP9 1835 aa18.57■□□□□ 0.56
VPS29-204ENST00000548259 PHLPP2Q6ZVD8 1323 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 SMIM28A0A1B0GU29 152 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 FAM205CA6NFA0 338 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 I3L4J1 428 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 K7ERI5 159 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 SPATA31C1P0DKV0 1188 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 CCNE1P24864 410 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 RPL9P32969 192 aaKnown RBP18.56■□□□□ 0.56
VPS29-204ENST00000548259 KPNA1P52294 538 aaPredicted RBP18.56■□□□□ 0.56
VPS29-204ENST00000548259 ANKRD1Q15327 319 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 CTXN3Q4LDR2 81 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 EEF1DP3Q658K8 133 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 VITQ6UXI7 678 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 CEP68Q76N32 757 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 MFSD6LQ8IWD5 586 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 APPL2Q8NEU8 664 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 ZSCAN18Q8TBC5 510 aaPredicted RBP18.56■□□□□ 0.56
VPS29-204ENST00000548259 MTMR9Q96QG7 549 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 POLR3CQ9BUI4 534 aaPredicted RBP18.56■□□□□ 0.56
VPS29-204ENST00000548259 CXCL16Q9H2A7 254 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 TRPV4Q9HBA0 871 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 GOLGA2P5Q9HBQ8 144 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 COL4A3Q01955 1670 aa18.56■□□□□ 0.56
VPS29-204ENST00000548259 SHISA7A6NL88 538 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 PODXLO00592 558 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 CHRNB1P11230 501 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 MYL4P12829 197 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 GRM5P41594 1212 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms