RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CASP8AP2Q9UKL3 1982 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 SART1O43290 800 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 LDHCP07864 332 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CDK8P49336 464 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 RASSF2P50749 326 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 COG7P83436 770 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 FKBP3Q00688 224 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 AMPD2Q01433 879 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 STK4Q13043 487 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 FYB2Q5VWT5 728 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CCDC62Q6P9F0 684 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 PPP1R21Q6ZMI0 780 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 ARHGAP27Q6ZUM4 889 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 SPATC1Q76KD6 591 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 NEK8Q86SG6 692 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 ZC3H18Q86VM9 953 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 TRIM42Q8IWZ5 723 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 SRRM1Q8IYB3 904 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 SYCE1Q8N0S2 351 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 MYCBPAPQ8TBZ2 947 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 TBCKQ8TEA7 893 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 COA7Q96BR5 231 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 HHIPL1Q96JK4 782 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CHORDC1Q9UHD1 332 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 PFDN2Q9UHV9 154 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 GPN3Q9UHW5 284 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 DBR1Q9UK59 544 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 PPM1HQ9ULR3 514 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 KCNH4Q9UQ05 1017 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 TTI1O43156 1089 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 EFSO43281 561 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 SYF2O95926 243 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 RPS12P25398 132 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 PMS1P54277 932 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CHRNDQ07001 517 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 MTM1Q13496 603 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 UBAP2LQ14157 1087 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 C21orf62-AS1Q17RA5 79 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 TPH2Q8IWU9 490 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 DTX3LQ8TDB6 740 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 LARP4BQ92615 738 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 BHMTQ93088 406 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CHMP6Q96FZ7 201 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 DYDC2Q96IM9 177 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 TRIM51Q9BSJ1 452 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 TCHPQ9BT92 498 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 SYNCQ9H7C4 482 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 VIPAS39Q9H9C1 493 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CNTNAP1P78357 1384 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 MROH5Q6ZUA9 1318 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 ANO9A1A5B4 782 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 RAD51CO43502 376 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CIB2O75838 187 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 FAM153BP0C7A2 387 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CYP2D6P10635 497 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 ATP5DP30049 168 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 PPP1R2P41236 205 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 MRPL12P52815 198 aaKnown RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 LMNB2Q03252 620 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CLCQ05315 142 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 TMED2Q15363 201 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 PTGISQ16647 500 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 FAM153CQ494X1 144 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 FAM83BQ5T0W9 1011 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 STXBP4Q6ZWJ1 553 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 USP50Q70EL3 339 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 SDCCAG8Q86SQ7 713 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-203ENST00000547825 IRF2BP1Q8IU81 584 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 SLITRK4Q8IW52 837 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 PPM1KQ8N3J5 372 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 GSDMBQ8TAX9 411 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 PMEPA1Q969W9 287 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 IGFLR1Q9H665 355 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 FAM153AQ9UHL3 310 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 CAPN11Q9UMQ6 739 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 DNM3Q9UQ16 869 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 MSRB2Q9Y3D2 182 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 SLC4A7Q9Y6M7 1214 aa5.86□□□□□ -1.47
LIMA1-203ENST00000547825 STK36Q9NRP7 1315 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ZBTB42B2RXF5 422 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 AGPSO00116 658 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 PDE2AO00408 941 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 KIF1CO43896 1103 aaKnown RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 GLI1P08151 1106 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 ATF7P17544 494 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 FGFR4P22455 802 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 HIBADHP31937 336 aaKnown RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 RAD23BP54727 409 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 DR1Q01658 176 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 SLC20A2Q08357 652 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 BIRC3Q13489 604 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 PKN1Q16512 942 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 DDR2Q16832 855 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 PRR16Q569H4 304 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 NSMFQ6X4W1 530 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 CEP128Q6ZU80 1094 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 AGBL3Q8NEM8 1001 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 SGSM3Q96HU1 749 aa5.85□□□□□ -1.47
LIMA1-203ENST00000547825 PRMT1Q99873 361 aaKnown RBP5.85□□□□□ -1.47
LIMA1-203ENST00000547825 PITPNM3Q9BZ71 974 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms