RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 PRDM1O75626 825 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 GHRP10912 638 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 IL10P22301 178 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 CYP2C19P33261 490 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 FPGSQ05932 587 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PPIL2Q13356 520 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 SNX1Q13596 522 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ITGA9Q13797 1035 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ATAT1Q5SQI0 421 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 RGL4Q8IZJ4 473 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 LCORLQ8N3X6 602 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 BANK1Q8NDB2 785 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 KCNB2Q92953 911 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 RPAP3Q9H6T3 665 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 LRRC4Q9HBW1 653 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 NRBP1Q9UHY1 535 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 AP3M1Q9Y2T2 418 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 SFI1A8K8P3 1242 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 OPLAHO14841 1288 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 SRGNP10124 158 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ADD1P35611 737 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 IFNAR2P48551 515 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 VAMP7P51809 220 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PSMC5P62195 406 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 AP1B1Q10567 949 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 RABL6Q3YEC7 729 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 AASDHQ4L235 1098 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ZNF667Q5HYK9 610 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 SYCP2LQ5T4T6 812 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 TTC39BQ5VTQ0 682 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 GRAMD4Q6IC98 578 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 EIF1ADQ8N9N8 165 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ASAP3Q8TDY4 903 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 STK33Q9BYT3 514 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 C17orf75Q9HAS0 396 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PDP2Q9P2J9 529 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ATXN2Q99700 1313 aaKnown RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SYNCRIPO60506 623 aaKnown RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 ZC3H11AO75152 810 aaKnown RBP eCLIP8.23□□□□□ -1.093e-6■■■■□ 19.8
VPS13D-211ENST00000543710 RHOBTB3O94955 611 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 HADHAP40939 763 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 ATL2Q8NHH9 583 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 CALML6Q8TD86 181 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SUCLA2Q9P2R7 463 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SLC13A4Q9UKG4 626 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 MAFGO15525 162 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 TOM1L1O75674 476 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 MYBL2P10244 700 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 MYBPC2Q14324 1141 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 CAPRIN1Q14444 709 aaKnown RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 FRA10AC1Q70Z53 315 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 PATL1Q86TB9 770 aaKnown RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 TRIM69Q86WT6 500 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 FBXL16Q8N461 479 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 ZNF555Q8NEP9 628 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SCFD1Q8WVM8 642 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 CEP170P1Q96L14 293 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 PHF20Q9BVI0 1012 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 KNDC1Q76NI1 1749 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 ADGRA3Q8IWK6 1321 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 M0R3G1 203 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 DEAF1O75398 565 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 GH2P01242 217 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 PHKA1P46020 1223 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 FXR2P51116 673 aaKnown RBP eCLIP8.23□□□□□ -1.093e-7■■■□□ 17.5
VPS13D-211ENST00000543710 LAMC2Q13753 1193 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 CD302Q8IX05 232 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SPICE1Q8N0Z3 855 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 ZSCAN1Q8NBB4 408 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 ACRBPQ8NEB7 543 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 CD99L2Q8TCZ2 262 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 COG1Q8WTW3 980 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SLC32A1Q9H598 525 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 PSMC3IPQ9P2W1 217 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 NCKAP1Q9Y2A7 1128 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 FLT1P17948 1338 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 GPR25O00155 361 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SEC31AO94979 1220 aaKnown RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 DLATP10515 647 aaKnown RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 FNTAP49354 379 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 ARFIP2P53365 341 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 KAZNQ674X7 775 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 FBXO38Q6PIJ6 1188 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 KDM7AQ6ZMT4 941 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 ZNF589Q86UQ0 364 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 LRRC47Q8N1G4 583 aaKnown RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 TRIML2Q8N7C3 387 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 KCNK16Q96T55 309 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 AGPAT1Q99943 283 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 OXCT2Q9BYC2 517 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 TRPC7Q9HCX4 862 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SAYSD1Q9NPB0 183 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 GPRC5DQ9NZD1 345 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SCHIP1Q9P0W5 487 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 TUBE1Q9UJT0 475 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SYNPO2Q9UMS6 1093 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 PTPN22Q9Y2R2 807 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 MAGEB2O15479 319 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 MAN1A2O60476 641 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms