RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 NNTQ13423 1086 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 MARCH8Q5T0T0 291 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 B4GALNT4Q76KP1 1039 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 HDAC7Q8WUI4 952 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 JAKMIP2Q96AA8 810 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 HPCAL4Q9UM19 191 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 ADGRG1Q9Y653 693 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 SAR1BQ9Y6B6 198 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 SYF2O95926 243 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 IQCF3P0C7M6 154 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 MAPTP10636 758 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 ARL2P36404 184 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 TMEM192Q8IY95 271 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 ZNF507Q8TCN5 953 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 TMEM40Q8WWA1 233 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 CHP1Q99653 195 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 PI4K2AQ9BTU6 479 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 LSM14BQ9BX40 385 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 MAF1Q9H063 256 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 KCTD10Q9H3F6 313 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 LRRN2O75325 713 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 PDHA1P08559 390 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 CD52P31358 61 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 GPC3P51654 580 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 KCNH2Q12809 1159 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 SNRNP35Q16560 246 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 ACCSLQ4AC99 568 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 SCARA5Q6ZMJ2 495 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 FAM47EQ6ZV65 393 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 ELOA2Q8IYF1 753 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 FIZ1Q96SL8 496 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 OSBPL7Q9BZF2 842 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 RBAKQ9NYW8 714 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 PDXKO00764 312 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 MSCO60682 206 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 GNRH1P01148 92 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 TUBB4AP04350 444 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 CXCL8P10145 99 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 ARF4P18085 180 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 ZNF131P52739 623 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 GJB7Q6PEY0 223 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 TAS1R3Q7RTX0 852 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 IRF2BP1Q8IU81 584 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 KLHL7Q8IXQ5 586 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 CCDC13Q8IYE1 715 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 LPPQ93052 612 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 NDST4Q9H3R1 872 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 SLC40A1Q9NP59 571 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 GTF2IRD1Q9UHL9 959 aa9.3□□□□□ -0.92
LIMCH1-209ENST00000509277 GOLGA6L10A0A0M3HER8 536 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 CCDC85CA6NKD9 419 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 SSTR3P32745 418 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 PPP1R2P41236 205 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 IFNAR2P48551 515 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 USP4Q13107 963 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 TDRD12Q587J7 1177 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 LHX8Q68G74 356 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 RRAGAQ7L523 313 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 ARMC2Q8NEN0 867 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 OR2W6PQ8NHA6 318 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 COG1Q8WTW3 980 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 EMID1Q96A84 441 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 SELENOSQ9BQE4 189 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 HSD3B7Q9H2F3 369 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 CACNG4Q9UBN1 327 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 MGAMO43451 1857 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 ZNF233A6NK53 670 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 MEFVO15553 781 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 SLC26A4O43511 780 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 B4GALT4O60513 344 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 ADRB2P07550 413 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 EIF4BP23588 611 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 FXR1P51114 621 aaKnown RBP eCLIP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 FBXO46Q6PJ61 603 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 PPM1KQ8N3J5 372 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 SPAG5Q96R06 1193 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 CTAGE1Q96RT6 745 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 C2orf40Q9H1Z8 148 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 THAP9Q9H5L6 903 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 DUSP10Q9Y6W6 482 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 MYO7AQ13402 2215 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 EIF3HO15372 352 aaKnown RBP eCLIP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 SLC9A1P19634 815 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 ADSSP30520 456 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 ARHGAP25P42331 645 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 EFNA5P52803 228 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 NCKAP1LP55160 1127 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 POLE2P56282 527 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 PTENP60484 403 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 POLR2FP61218 127 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 GTF2BQ00403 316 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 EHHADHQ08426 723 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 PAN2Q504Q3 1202 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 ZNF618Q5T7W0 954 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 LRRC55Q6ZSA7 311 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 EXOC8Q8IYI6 725 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 NSMCE1Q8WV22 266 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 STAMBPL1Q96FJ0 436 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 EIF2AQ9BY44 585 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 TMEM165Q9HC07 324 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms