RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CACNG4Q9UBN1 327 aa22.07■■□□□ 1.12
PTCD3-220ENST00000627371 PUF60Q9UHX1 559 aaKnown RBP22.07■■□□□ 1.12
PTCD3-220ENST00000627371 MAN1B1Q9UKM7 699 aa22.07■■□□□ 1.12
PTCD3-220ENST00000627371 MAPK8IP1Q9UQF2 711 aa22.07■■□□□ 1.12
PTCD3-220ENST00000627371 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.07■■□□□ 1.12
PTCD3-220ENST00000627371 REV3LO60673 3130 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 GOLGA8IPA6NC78 632 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 GOLGA8JA6NMD2 632 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 PDXKO00764 312 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 SOX4Q06945 474 aaPredicted RBP22.06■■□□□ 1.12
PTCD3-220ENST00000627371 HSP90AA2PQ14568 343 aaPredicted RBP22.06■■□□□ 1.12
PTCD3-220ENST00000627371 CAMK4Q16566 473 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 TMEM174Q8WUU8 243 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 FAM212AQ96EL1 285 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 KIF12Q96FN5 646 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 FBXL18Q96ME1 805 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 UROC1Q96N76 676 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 PAAF1Q9BRP4 392 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 COLEC11Q9BWP8 271 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 ASB7Q9H672 318 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 KIAA1586Q9HCI6 787 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 TLR9Q9NR96 1032 aa22.06■■□□□ 1.12
PTCD3-220ENST00000627371 RBAKQ9NYW8 714 aaPredicted RBP22.06■■□□□ 1.12
PTCD3-220ENST00000627371 COL6A3P12111 3177 aa22.05■■□□□ 1.12
PTCD3-220ENST00000627371 IL18RAPO95256 599 aa22.05■■□□□ 1.12
PTCD3-220ENST00000627371 SPAG1Q07617 926 aa22.05■■□□□ 1.12
PTCD3-220ENST00000627371 ZBTB6Q15916 424 aa22.05■■□□□ 1.12
PTCD3-220ENST00000627371 DDX53Q86TM3 631 aaKnown RBP22.05■■□□□ 1.12
PTCD3-220ENST00000627371 XXYLT1Q8NBI6 393 aa22.05■■□□□ 1.12
PTCD3-220ENST00000627371 NOC3LQ8WTT2 800 aaKnown RBP22.05■■□□□ 1.12
PTCD3-220ENST00000627371 C18orf25Q96B23 403 aaPredicted RBP22.05■■□□□ 1.12
PTCD3-220ENST00000627371 GOLGA2P5Q9HBQ8 144 aa22.05■■□□□ 1.12
PTCD3-220ENST00000627371 STK39Q9UEW8 545 aa22.05■■□□□ 1.12
PTCD3-220ENST00000627371 UBQLN1Q9UMX0 589 aaKnown RBP22.05■■□□□ 1.12
PTCD3-220ENST00000627371 TRAF3IP3Q9Y228 551 aa22.05■■□□□ 1.12
PTCD3-220ENST00000627371 DERAQ9Y315 318 aa22.05■■□□□ 1.12
PTCD3-220ENST00000627371 VWA8A3KMH1 1905 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 F8W810 466 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 XPOTO43592 962 aaKnown RBP22.04■■□□□ 1.12
PTCD3-220ENST00000627371 CYP3A5P20815 502 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 PRCPP42785 496 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 CYP2J2P51589 502 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 UPP1Q16831 310 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 TIGD5Q53EQ6 642 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 JADE1Q6IE81 842 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 SLC9A9Q8IVB4 645 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 GPT2Q8TD30 523 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 RABGGTAQ92696 567 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 DDX27Q96GQ7 796 aaKnown RBP22.04■■□□□ 1.12
PTCD3-220ENST00000627371 KIAA1468Q9P260 1216 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 TUBGCP4Q9UGJ1 667 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 ADAM28Q9UKQ2 775 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 C2CD2Q9Y426 696 aa22.04■■□□□ 1.12
PTCD3-220ENST00000627371 ZNF233A6NK53 670 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 TMEM189-UBE2V1I3L0A0 370 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 FSCN2O14926 492 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 CALUO43852 315 aaPredicted RBP22.03■■□□□ 1.12
PTCD3-220ENST00000627371 CSPG5O95196 566 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 KIF4AO95239 1232 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 EFEMP2O95967 443 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 NFICP08651 508 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 CLCNKBP51801 687 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 ERVFC1P60507 584 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 MORC3Q14149 939 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 TMEM132DQ14C87 1099 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 NFIL3Q16649 462 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 NT5DC4Q86YG4 428 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 CBWD2Q8IUF1 395 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 VN1R3Q9BXE9 311 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 NUP62CLQ9H1M0 184 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 DMAC2Q9NW81 257 aa22.03■■□□□ 1.12
PTCD3-220ENST00000627371 NR3C1P04150 777 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 BMP6P22004 513 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 RPL9P32969 192 aaKnown RBP22.02■■□□□ 1.12
PTCD3-220ENST00000627371 IRS1P35568 1242 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 WNT7BP56706 349 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 MYBPC2Q14324 1141 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 SNRNP35Q16560 246 aaKnown RBP22.02■■□□□ 1.12
PTCD3-220ENST00000627371 ZCWPW2Q504Y3 356 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 SPATA1Q5VX52 437 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 ISM2Q6H9L7 571 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 PDE12Q6L8Q7 609 aaKnown RBP22.02■■□□□ 1.12
PTCD3-220ENST00000627371 FUT10Q6P4F1 479 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 EFCAB13Q8IY85 973 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 RNF168Q8IYW5 571 aaPredicted RBP22.02■■□□□ 1.12
PTCD3-220ENST00000627371 ADSSL1Q8N142 457 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 VPS52Q8N1B4 723 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 TRIML1Q8N9V2 468 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 TCF25Q9BQ70 676 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 ZBP1Q9H171 429 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 NSUN3Q9H649 340 aaKnown RBP22.02■■□□□ 1.12
PTCD3-220ENST00000627371 SCN1AP35498 2009 aa22.02■■□□□ 1.12
PTCD3-220ENST00000627371 BIN1O00499 593 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 PODXLO00592 558 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 EXOC3O60645 756 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 TADA2AO75478 443 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 B3GAT3O94766 335 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 MBD3O95983 291 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 SOD2P04179 222 aa22.01■■□□□ 1.11
PTCD3-220ENST00000627371 LRPAP1P30533 357 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms