RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 SLC11A1P49279 550 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 CASP4P49662 377 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 FXR1P51114 621 aaKnown RBP eCLIP23.53■■□□□ 1.36
SNX1-206ENST00000559389 SOX4Q06945 474 aaPredicted RBP23.53■■□□□ 1.36
SNX1-206ENST00000559389 SPAG1Q07617 926 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 CYP24A1Q07973 514 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 ZBTB6Q15916 424 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 ZNF697Q5TEC3 545 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 CEP135Q66GS9 1140 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 KCNT2Q6UVM3 1135 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 EFCAB13Q8IY85 973 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 PLVAPQ9BX97 442 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 TUBGCP4Q9UGJ1 667 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 DACH1Q9UI36 760 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 MTUS1Q9ULD2 1270 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 C2CD2Q9Y426 696 aa23.53■■□□□ 1.36
SNX1-206ENST00000559389 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.53■■□□□ 1.36
SNX1-206ENST00000559389 CARNS1A5YM72 827 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 MAPK13O15264 365 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 AKAP3O75969 853 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 GALTP07902 379 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 FKBP3Q00688 224 aaKnown RBP23.52■■□□□ 1.36
SNX1-206ENST00000559389 TMEM132DQ14C87 1099 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 PSMD6Q15008 389 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 SASS6Q6UVJ0 657 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 NT5DC4Q86YG4 428 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 SLC39A11Q8N1S5 342 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 RDH13Q8NBN7 331 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 C18orf25Q96B23 403 aaPredicted RBP23.52■■□□□ 1.36
SNX1-206ENST00000559389 MFSD14AQ96MC6 490 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 DUSP9Q99956 384 aaKnown RBP23.52■■□□□ 1.36
SNX1-206ENST00000559389 PDE11AQ9HCR9 933 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 CACNG4Q9UBN1 327 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 RWDD2AQ9UIY3 292 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 UBQLN1Q9UMX0 589 aaKnown RBP23.52■■□□□ 1.36
SNX1-206ENST00000559389 FRMD4BQ9Y2L6 1034 aa23.52■■□□□ 1.36
SNX1-206ENST00000559389 CASTOR2A6NHX0 329 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 RB1P06400 928 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 PPM1AP35813 382 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 STX17P56962 302 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 ADAM9Q13443 819 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 SURF1Q15526 300 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 STX1AQ16623 288 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 TMEM173Q86WV6 379 aaPredicted RBP23.51■■□□□ 1.35
SNX1-206ENST00000559389 FBXO22Q8NEZ5 403 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 ARNTL2Q8WYA1 636 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 MED15Q96RN5 788 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 MKNK1Q9BUB5 465 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 GZF1Q9H116 711 aaPredicted RBP23.51■■□□□ 1.35
SNX1-206ENST00000559389 CERS4Q9HA82 394 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 GOLGA2P5Q9HBQ8 144 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 PCDHB12Q9Y5F1 795 aa23.51■■□□□ 1.35
SNX1-206ENST00000559389 PLXNA4Q9HCM2 1894 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 EPOPA6NHQ4 379 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 NRP1O14786 923 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 CETN3O15182 167 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 XPOTO43592 962 aaKnown RBP23.5■■□□□ 1.35
SNX1-206ENST00000559389 CYP3A5P20815 502 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 OR1G1P47890 313 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 ALDH7A1P49419 539 aaKnown RBP23.5■■□□□ 1.35
SNX1-206ENST00000559389 SPATA1Q5VX52 437 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 FAM186BQ8IYM0 893 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 PLEKHO2Q8TD55 490 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 BCL7CQ8WUZ0 217 aaPredicted RBP23.5■■□□□ 1.35
SNX1-206ENST00000559389 UROC1Q96N76 676 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 PAAF1Q9BRP4 392 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 C11orf84Q9BUA3 381 aaPredicted RBP23.5■■□□□ 1.35
SNX1-206ENST00000559389 ANO10Q9NW15 660 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 MARCH5Q9NX47 278 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 PRG3Q9Y2Y8 225 aaPredicted RBP23.5■■□□□ 1.35
SNX1-206ENST00000559389 PTPRJQ12913 1337 aa23.5■■□□□ 1.35
SNX1-206ENST00000559389 SLC16A3O15427 465 aaKnown RBP23.49■■□□□ 1.35
SNX1-206ENST00000559389 ERCC5P28715 1186 aaPredicted RBP23.49■■□□□ 1.35
SNX1-206ENST00000559389 TYRO3Q06418 890 aa23.49■■□□□ 1.35
SNX1-206ENST00000559389 CT47A1Q5JQC4 288 aaPredicted RBP23.49■■□□□ 1.35
SNX1-206ENST00000559389 WDR49Q8IV35 697 aa23.49■■□□□ 1.35
SNX1-206ENST00000559389 BEST2Q8NFU1 509 aa23.49■■□□□ 1.35
SNX1-206ENST00000559389 EEF2KMTQ96G04 330 aa23.49■■□□□ 1.35
SNX1-206ENST00000559389 CEP63Q96MT8 703 aa23.49■■□□□ 1.35
SNX1-206ENST00000559389 CGRRF1Q99675 332 aa23.49■■□□□ 1.35
SNX1-206ENST00000559389 SPG21Q9NZD8 308 aa23.49■■□□□ 1.35
SNX1-206ENST00000559389 FAN1Q9Y2M0 1017 aa23.49■■□□□ 1.35
SNX1-206ENST00000559389 LAMA3Q16787 3333 aa23.48■■□□□ 1.35
SNX1-206ENST00000559389 NT5C1B-RDH14C9J2C7 533 aa23.48■■□□□ 1.35
SNX1-206ENST00000559389 TMEM189-UBE2V1I3L0A0 370 aa23.48■■□□□ 1.35
SNX1-206ENST00000559389 FGF18O76093 207 aa23.48■■□□□ 1.35
SNX1-206ENST00000559389 LETM1O95202 739 aaPredicted RBP23.48■■□□□ 1.35
SNX1-206ENST00000559389 LRPAP1P30533 357 aa23.48■■□□□ 1.35
SNX1-206ENST00000559389 PSMC2P35998 433 aaKnown RBP23.48■■□□□ 1.35
SNX1-206ENST00000559389 CSGALNACT2Q8N6G5 542 aa23.48■■□□□ 1.35
SNX1-206ENST00000559389 KLHL23Q8NBE8 558 aa23.48■■□□□ 1.35
SNX1-206ENST00000559389 CCDC127Q96BQ5 260 aa23.48■■□□□ 1.35
SNX1-206ENST00000559389 DDX27Q96GQ7 796 aaKnown RBP23.48■■□□□ 1.35
SNX1-206ENST00000559389 IGSF21Q96ID5 467 aa23.48■■□□□ 1.35
SNX1-206ENST00000559389 F8W810 466 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 H3BNC9 293 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 KIF4AO95239 1232 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 ALDH2P05091 517 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 ITGB1P05556 798 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 EPB41P11171 864 aaKnown RBP23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms