RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 MYADML2A6NDP7 307 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 SEPT4O43236 478 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 SRGAP2O75044 1071 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 GNRH1P01148 92 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 HMGCRP04035 888 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 HARSP12081 509 aaKnown RBP18.12■□□□□ 0.49
LDLR-206ENST00000557958 HOXD8P13378 290 aaPredicted RBP18.12■□□□□ 0.49
LDLR-206ENST00000557958 GALCP54803 685 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 ITIH3Q06033 890 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 TAF4BQ92750 862 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 HAPLN2Q9GZV7 340 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 FZD8Q9H461 694 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 SPC25Q9HBM1 224 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 Q9Y3F1 56 aa18.12■□□□□ 0.49
LDLR-206ENST00000557958 NCANO14594 1321 aa18.11■□□□□ 0.49
LDLR-206ENST00000557958 PHACTR2O75167 634 aa18.11■□□□□ 0.49
LDLR-206ENST00000557958 HLA-DRAP01903 254 aa18.11■□□□□ 0.49
LDLR-206ENST00000557958 C4BPAP04003 597 aaKnown RBP18.11■□□□□ 0.49
LDLR-206ENST00000557958 BPIFB4P59827 614 aa18.11■□□□□ 0.49
LDLR-206ENST00000557958 PPFIA1Q13136 1202 aa18.11■□□□□ 0.49
LDLR-206ENST00000557958 ATF7IP2Q5U623 682 aa18.11■□□□□ 0.49
LDLR-206ENST00000557958 WDR49Q8IV35 697 aa18.11■□□□□ 0.49
LDLR-206ENST00000557958 EPS8L1Q8TE68 723 aa18.11■□□□□ 0.49
LDLR-206ENST00000557958 DHX38Q92620 1227 aaKnown RBP18.11■□□□□ 0.49
LDLR-206ENST00000557958 TLR10Q9BXR5 811 aa18.11■□□□□ 0.49
LDLR-206ENST00000557958 GRID2IPA4D2P6 1211 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 MYCP01106 439 aaPredicted RBP18.1■□□□□ 0.49
LDLR-206ENST00000557958 GZMAP12544 262 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 ZSCAN20P17040 1043 aaPredicted RBP18.1■□□□□ 0.49
LDLR-206ENST00000557958 TBXAS1P24557 533 aaPredicted RBP18.1■□□□□ 0.49
LDLR-206ENST00000557958 MCM3P25205 808 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 MEI1Q5TIA1 1274 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 TDRD10Q5VZ19 366 aaKnown RBP18.1■□□□□ 0.49
LDLR-206ENST00000557958 TMCO3Q6UWJ1 677 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 ZBTB33Q86T24 672 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 RHOT2Q8IXI1 618 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 RPUSD2Q8IZ73 545 aaKnown RBP18.1■□□□□ 0.49
LDLR-206ENST00000557958 ZNF516Q92618 1163 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 PPP1R16BQ96T49 567 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 SETD4Q9NVD3 440 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 AKT3Q9Y243 479 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 CNTNAP2Q9UHC6 1331 aa18.1■□□□□ 0.49
LDLR-206ENST00000557958 CYP26A1O43174 497 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 ZEB2O60315 1214 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 EDN1P05305 212 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 GJB1P08034 283 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 MFSD10Q14728 455 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 GRIK4Q16099 956 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 FAM187BQ17R55 369 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 ZNF568Q3ZCX4 644 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 CFAP221Q4G0U5 840 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 NFRKBQ6P4R8 1299 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 ZNF572Q7Z3I7 529 aaPredicted RBP18.09■□□□□ 0.49
LDLR-206ENST00000557958 IFNLR1Q8IU57 520 aaPredicted RBP18.09■□□□□ 0.49
LDLR-206ENST00000557958 MSANTD4Q8NCY6 345 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 OLIG1Q8TAK6 271 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 KAT5Q92993 513 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 MMS19Q96T76 1030 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 XPNPEP3Q9NQH7 507 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 NOCTQ9UK39 431 aaKnown RBP18.09■□□□□ 0.49
LDLR-206ENST00000557958 PTCH2Q9Y6C5 1203 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 CES2O00748 559 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 RTN2O75298 545 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 ERLIN1O75477 346 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 FTCDO95954 541 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 KRT5P13647 590 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 PROZP22891 400 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 MBTD1Q05BQ5 628 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 BRD3Q15059 726 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 RPS6KA1Q15418 735 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 LMBRD2Q68DH5 695 aaPredicted RBP18.09■□□□□ 0.49
LDLR-206ENST00000557958 SMYD5Q6GMV2 418 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 CREG2Q8IUH2 290 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 TPCN2Q8NHX9 752 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 SLC20A1Q8WUM9 679 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 KAT2BQ92831 832 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 PARD6BQ9BYG5 372 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.09■□□□□ 0.492e-6■■■■■ 33.2
LDLR-206ENST00000557958 OGFRQ9NZT2 677 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 TNFSF13BQ9Y275 285 aa18.09■□□□□ 0.49
LDLR-206ENST00000557958 RRN3P2A6NIE6 340 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 TMCO5BA8MYB1 307 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 CLSTN1O94985 981 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 SGPL1O95470 568 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 TFRCP02786 760 aaKnown RBP18.08■□□□□ 0.49
LDLR-206ENST00000557958 INHAP05111 366 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 CYP11B1P15538 503 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 PSEN2P49810 448 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 CDR2Q01850 454 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 KYAT1Q16773 422 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 ZBTB41Q5SVQ8 909 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 MTHFD1LQ6UB35 978 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 ZNF677Q86XU0 584 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 LINC01465Q8N7H1 131 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 PXYLP1Q8TE99 480 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 TATDN2Q93075 761 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 ISCUQ9H1K1 167 aa18.08■□□□□ 0.49
LDLR-206ENST00000557958 CPSF3Q9UKF6 684 aaKnown RBP18.08■□□□□ 0.49
LDLR-206ENST00000557958 CCDC151A5D8V7 595 aa18.07■□□□□ 0.48
LDLR-206ENST00000557958 ZNF185O15231 689 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms