RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 TSHZ2Q9NRE2 1034 aa21.22■□□□□ 0.99
USP40-207ENST00000450940 HCN4Q9Y3Q4 1203 aa21.22■□□□□ 0.99
USP40-207ENST00000450940 CCDC195A0A1B0GUA6 201 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 CLDN3O15551 220 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 STX6O43752 255 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 B3GAT3O94766 335 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 PIGRP01833 764 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 RPL17P18621 184 aaKnown RBP21.21■□□□□ 0.99
USP40-207ENST00000450940 SP100P23497 879 aaPredicted RBP21.21■□□□□ 0.99
USP40-207ENST00000450940 DHX8Q14562 1220 aaKnown RBP21.21■□□□□ 0.99
USP40-207ENST00000450940 SLC39A14Q15043 492 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 PSMD5Q16401 504 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 SLC10A6Q3KNW5 377 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 ZNF707Q96C28 371 aaPredicted RBP21.21■□□□□ 0.99
USP40-207ENST00000450940 FIZ1Q96SL8 496 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 HAPLN2Q9GZV7 340 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 PARVGQ9HBI0 331 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 GOLGA2P5Q9HBQ8 144 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 ZDHHC7Q9NXF8 308 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 TBX20Q9UMR3 447 aa21.21■□□□□ 0.99
USP40-207ENST00000450940 TMEM221A6NGB7 291 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 SPDYE4A6NLX3 237 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 M0R296 226 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 FAM13AO94988 1023 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 SPATA31D3P0C874 917 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 SIGLEC14Q08ET2 396 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 SPECC1Q5M775 1068 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 SPATA31D4Q6ZUB0 917 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 CEP57Q86XR8 500 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 MYCT1Q8N699 235 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 TDRD5Q8NAT2 981 aaKnown RBP21.2■□□□□ 0.98
USP40-207ENST00000450940 KREMEN2Q8NCW0 462 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 C3orf58Q8NDZ4 430 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 RASSF8Q8NHQ8 419 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 USP28Q96RU2 1077 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 ANKFY1Q9P2R3 1169 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 STK17AQ9UEE5 414 aa21.2■□□□□ 0.98
USP40-207ENST00000450940 TRAPPC3O43617 180 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 TRAK2O60296 914 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 RFPL2O75678 378 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 RPL9P32969 192 aaKnown RBP21.19■□□□□ 0.98
USP40-207ENST00000450940 ABCD1P33897 745 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 GTF2BQ00403 316 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 CCDC149Q6ZUS6 474 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 OTOP3Q7RTS5 596 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 MFSD14AQ96MC6 490 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 CLIC6Q96NY7 704 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 ST6GALNAC4Q9H4F1 302 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 PLEKHA5Q9HAU0 1116 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 WDR6Q9NNW5 1121 aaKnown RBP21.19■□□□□ 0.98
USP40-207ENST00000450940 FOXD4L1Q9NU39 408 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 CCDC39Q9UFE4 941 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 FBXW11Q9UKB1 542 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 SORCS3Q9UPU3 1222 aa21.19■□□□□ 0.98
USP40-207ENST00000450940 DOCK8Q8NF50 2099 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 ZMYND10O75800 440 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 KRT18P05783 430 aaKnown RBP21.18■□□□□ 0.98
USP40-207ENST00000450940 CLTAP09496 248 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 HARSP12081 509 aaKnown RBP21.18■□□□□ 0.98
USP40-207ENST00000450940 NASPP49321 788 aaPredicted RBP21.18■□□□□ 0.98
USP40-207ENST00000450940 RAB33AQ14088 237 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 GLYCTKQ8IVS8 523 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 UBALD2Q8IYN6 164 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 ACSF2Q96CM8 615 aaPredicted RBP21.18■□□□□ 0.98
USP40-207ENST00000450940 ASIC4Q96FT7 647 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 PRKD2Q9BZL6 878 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 MTRRQ9UBK8 725 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 LIMD1Q9UGP4 676 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 BACE2Q9Y5Z0 518 aa21.18■□□□□ 0.98
USP40-207ENST00000450940 TTC26A0AVF1 554 aa21.17■□□□□ 0.98
USP40-207ENST00000450940 PODXLO00592 558 aa21.17■□□□□ 0.98
USP40-207ENST00000450940 ADAM12O43184 909 aa21.17■□□□□ 0.98
USP40-207ENST00000450940 FAM189A1O60320 539 aa21.17■□□□□ 0.98
USP40-207ENST00000450940 ADRB2P07550 413 aa21.17■□□□□ 0.98
USP40-207ENST00000450940 CEBPZQ03701 1054 aaKnown RBP21.17■□□□□ 0.98
USP40-207ENST00000450940 KYAT1Q16773 422 aa21.17■□□□□ 0.98
USP40-207ENST00000450940 SEZ6Q53EL9 994 aa21.17■□□□□ 0.98
USP40-207ENST00000450940 SMG7Q92540 1137 aaKnown RBP21.17■□□□□ 0.98
USP40-207ENST00000450940 C18orf25Q96B23 403 aaPredicted RBP21.17■□□□□ 0.98
USP40-207ENST00000450940 KCNH6Q9H252 994 aa21.17■□□□□ 0.98
USP40-207ENST00000450940 DOCK6Q96HP0 2047 aa21.17■□□□□ 0.98
USP40-207ENST00000450940 A0A0B4J269 797 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 K7ENM7 598 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 TBCAO75347 108 aaKnown RBP21.16■□□□□ 0.98
USP40-207ENST00000450940 TKTP29401 623 aaKnown RBP21.16■□□□□ 0.98
USP40-207ENST00000450940 PLA2G5P39877 138 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 BRCC3P46736 316 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 LIG4P49917 911 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 ZBTB6Q15916 424 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 RRAGBQ5VZM2 374 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 ANKS3Q6ZW76 656 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 MAP4K3Q8IVH8 894 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 KRI1Q8N9T8 703 aaKnown RBP21.16■□□□□ 0.98
USP40-207ENST00000450940 BICD1Q96G01 975 aa21.16■□□□□ 0.98
USP40-207ENST00000450940 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.16■□□□□ 0.98
USP40-207ENST00000450940 CLUHO75153 1309 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 HNRNPDLO14979 420 aaKnown RBP21.15■□□□□ 0.98
USP40-207ENST00000450940 OGTO15294 1046 aa21.15■□□□□ 0.98
USP40-207ENST00000450940 N4BP1O75113 896 aaKnown RBP21.15■□□□□ 0.98
USP40-207ENST00000450940 HNRNPA1P09651 372 aaKnown RBP eCLIP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms