RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 HDAC5Q9UQL6 1122 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 CFTRP13569 1480 aa5.24□□□□□ -1.57
VPS29-202ENST00000447578 VPS8Q8N3P4 1428 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 CUX1P39880 1505 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 BIVM-ERCC5R4GMW8 1640 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 GOLGA8AA7E2F4 631 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 MASP2O00187 686 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 TGM5O43548 720 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 PPFIA4O75335 1185 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 NDUFA10O95299 355 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 PFKMP08237 780 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 CD40P25942 277 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 CLK3P49761 638 aaKnown RBP5.23□□□□□ -1.57
VPS29-202ENST00000447578 GZMKP49863 264 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 LRRC32Q14392 662 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 METTL24Q5JXM2 366 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 ESPNLQ6ZVH7 1005 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 GDF7Q7Z4P5 450 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 PRIMA1Q86XR5 153 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 SAMD3Q8N6K7 520 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 GAB3Q8WWW8 586 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 SPON1Q9HCB6 807 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 AKIP1Q9NQ31 210 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 CHST12Q9NRB3 414 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 PNMA8BQ9ULN7 279 aaPredicted RBP5.23□□□□□ -1.57
VPS29-202ENST00000447578 NOC2LQ9Y3T9 749 aaKnown RBP5.23□□□□□ -1.57
VPS29-202ENST00000447578 KIF27Q86VH2 1401 aa5.23□□□□□ -1.57
VPS29-202ENST00000447578 TMEM200CA6NKL6 621 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 SEC24DO94855 1032 aaPredicted RBP5.22□□□□□ -1.57
VPS29-202ENST00000447578 RBP3P10745 1247 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 LSP1P33241 339 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 CYP2C19P33261 490 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 RNASE9P60153 205 aaKnown RBP5.22□□□□□ -1.57
VPS29-202ENST00000447578 DUSP2Q05923 314 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 MGAT5Q09328 741 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 GTF2H3Q13889 308 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 ODF1Q14990 250 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 ANKS6Q68DC2 871 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 KRTAP5-11Q6L8G4 156 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 DOK3Q7L591 496 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 GPRIN1Q7Z2K8 1008 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 RASSF3Q86WH2 238 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 ADGRG3Q86Y34 549 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 SYT12Q8IV01 421 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 AMOTL1Q8IY63 956 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 CMTR2Q8IYT2 770 aaKnown RBP5.22□□□□□ -1.57
VPS29-202ENST00000447578 FERMT2Q96AC1 680 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 PRDM11Q9NQV5 511 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 CHST2Q9Y4C5 530 aa5.22□□□□□ -1.57
VPS29-202ENST00000447578 PRXQ9BXM0 1461 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 ZMYM3Q14202 1370 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 ST20-MTHFSA0A0A6YYL1 179 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 A0A1W2PR48 441 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 PRSS38A1L453 326 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 KLHL33A6NCF5 533 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 FZD9O00144 591 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 RNASET2O00584 256 aaKnown RBP5.21□□□□□ -1.58
VPS29-202ENST00000447578 ZNF185O15231 689 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 XPOTO43592 962 aaKnown RBP5.21□□□□□ -1.58
VPS29-202ENST00000447578 IL33O95760 270 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 LDHAP00338 332 aaKnown RBP5.21□□□□□ -1.58
VPS29-202ENST00000447578 NBPF7P0C2Y1 421 aaPredicted RBP5.21□□□□□ -1.58
VPS29-202ENST00000447578 VCAM1P19320 739 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 USP14P54578 494 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 WNT3AP56704 352 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 NHLH2Q02577 135 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 UBE3CQ15386 1083 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 TERF2Q15554 542 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 CLUL1Q15846 466 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 ARHGAP29Q52LW3 1261 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 STRIP1Q5VSL9 837 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 CCDC62Q6P9F0 684 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 TSHZ1Q6ZSZ6 1077 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 CMIPQ8IY22 773 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 HSPBAP1Q96EW2 488 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 LRGUKQ96M69 825 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 ZNF700Q9H0M5 742 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 PRDM13Q9H4Q3 707 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 ZBTB21Q9ULJ3 1066 aa5.21□□□□□ -1.58
VPS29-202ENST00000447578 ERICH3Q5RHP9 1530 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 UNC119BA6NIH7 251 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 PRR5-ARHGAP8B1AHC4 643 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 C21orf58P58505 322 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 ACAP2Q15057 778 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 TMEM240Q5SV17 173 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 EFCAB2Q5VUJ9 269 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 BTNL9Q6UXG8 535 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 BHLHA9Q7RTU4 235 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 ARHGEF19Q8IW93 802 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 LCORLQ8N3X6 602 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 SUPT20HQ8NEM7 779 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 SVIPQ8NHG7 77 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 TIFAQ96CG3 184 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 SLC39A13Q96H72 371 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 DCLRE1CQ96SD1 692 aaKnown RBP5.2□□□□□ -1.58
VPS29-202ENST00000447578 ANO3Q9BYT9 981 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 TOPORSQ9NS56 1045 aaPredicted RBP5.2□□□□□ -1.58
VPS29-202ENST00000447578 DKK2Q9UBU2 259 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 TMPRSS11EQ9UL52 423 aa5.2□□□□□ -1.58
VPS29-202ENST00000447578 EPN1Q9Y6I3 576 aaPredicted RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms