RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CASTOR2A6NHX0 329 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 H0YCG3 227 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 TMEM189-UBE2V1I3L0A0 370 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 PLS3P13797 630 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 SCP2P22307 547 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 SP100P23497 879 aaPredicted RBP20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 SLC12A3P55017 1021 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 MTMR3Q13615 1198 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 TMEM119Q4V9L6 283 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 DCLRE1AQ6PJP8 1040 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 KREMEN2Q8NCW0 462 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 CALML4Q96GE6 196 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 PPP1R10Q96QC0 940 aaKnown RBP20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 PAAF1Q9BRP4 392 aa20.93■□□□□ 0.94
CCDC28A-203ENST00000617445 C2orf16Q68DN1 1984 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 CITO14578 2027 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 CCDC195A0A1B0GUA6 201 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 BRD1O95696 1058 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 PLA2G4BP0C869 781 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 MCF2P10911 925 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 UBA7P41226 1012 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 STRN3Q13033 797 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 ZNF568Q3ZCX4 644 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 XKR4Q5GH76 650 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 FAM171A1Q5VUB5 890 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 LILRA6Q6PI73 481 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 SUGP1Q8IWZ8 645 aaKnown RBP20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 PIK3R5Q8WYR1 880 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 RABGGTAQ92696 567 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 STAMQ92783 540 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 PRRX2Q99811 253 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 TCHPQ9BT92 498 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 CDT1Q9H211 546 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 SLC38A7Q9NVC3 462 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 ZDHHC7Q9NXF8 308 aa20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 LARSQ9P2J5 1176 aaKnown RBP20.92■□□□□ 0.94
CCDC28A-203ENST00000617445 SLC16A4O15374 487 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 TGM5O43548 720 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 TRAPPC3O43617 180 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 KIF4AO95239 1232 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 PROZP22891 400 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 LONP1P36776 959 aaKnown RBP20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 MPZL3Q6UWV2 235 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 ALKAL1Q6UXT8 129 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 TAS1R3Q7RTX0 852 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 PALB2Q86YC2 1186 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 FBXL6Q8N531 539 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 KCNN1Q92952 543 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 ASIC4Q96FT7 647 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 DDX27Q96GQ7 796 aaKnown RBP20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 B3GALT6Q96L58 329 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 ACAP3Q96P50 834 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 TARS2Q9BW92 718 aaKnown RBP20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 LIMD1Q9UGP4 676 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 ODF2LQ9ULJ1 636 aa20.91■□□□□ 0.94
CCDC28A-203ENST00000617445 SMIM28A0A1B0GU29 152 aa20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 SFI1A8K8P3 1242 aa20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 RTP2Q5QGT7 225 aa20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 ZPBP2Q6X784 338 aa20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 TMEM161BQ8NDZ6 487 aa20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 PLIN2Q99541 437 aa20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 CXCL16Q9H2A7 254 aa20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 WDR6Q9NNW5 1121 aaKnown RBP20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 CACNG4Q9UBN1 327 aa20.9■□□□□ 0.94
CCDC28A-203ENST00000617445 TOM1L1O75674 476 aa20.89■□□□□ 0.93
CCDC28A-203ENST00000617445 B3GAT3O94766 335 aa20.89■□□□□ 0.93
CCDC28A-203ENST00000617445 PSMD5Q16401 504 aa20.89■□□□□ 0.93
CCDC28A-203ENST00000617445 UPP1Q16831 310 aa20.89■□□□□ 0.93
CCDC28A-203ENST00000617445 CEP57Q86XR8 500 aa20.89■□□□□ 0.93
CCDC28A-203ENST00000617445 LNX1Q8TBB1 728 aaPredicted RBP20.89■□□□□ 0.93
CCDC28A-203ENST00000617445 HASPINQ8TF76 798 aa20.89■□□□□ 0.93
CCDC28A-203ENST00000617445 SMG7Q92540 1137 aaKnown RBP20.89■□□□□ 0.93
CCDC28A-203ENST00000617445 ABLIM1O14639 778 aa20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 MAPTP10636 758 aaKnown RBP20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 KCNE1P15382 129 aa20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 FGFR3P22607 806 aa20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 ABCD1P33897 745 aa20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 RAD51AP2Q09MP3 1159 aa20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 SF3A1Q15459 793 aaKnown RBP20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 PRSS55Q6UWB4 352 aaPredicted RBP20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 RTL10Q7L3V2 364 aa20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 CLSTN3Q9BQT9 956 aa20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 PRKD2Q9BZL6 878 aa20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.88■□□□□ 0.93
CCDC28A-203ENST00000617445 VWA8A3KMH1 1905 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 RFPL2O75678 378 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 ZMYND10O75800 440 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 SPATA31D3P0C874 917 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 RPL17P18621 184 aaKnown RBP20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 RPL9P32969 192 aaKnown RBP20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 CLCNKBP51801 687 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 ARSHQ5FYA8 562 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 GLRA4Q5JXX5 417 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 SPATA31D4Q6ZUB0 917 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 CEP120Q8N960 986 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 INTS4Q96HW7 963 aaKnown RBP20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 SNX27Q96L92 541 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 PIDD1Q9HB75 910 aa20.87■□□□□ 0.93
CCDC28A-203ENST00000617445 CNTN3Q9P232 1028 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms