RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PTGDRQ13258 359 aa18.85■□□□□ 0.61
CLN3-216ENST00000565316 ATF7IP2Q5U623 682 aa18.85■□□□□ 0.61
CLN3-216ENST00000565316 SLC44A3Q8N4M1 653 aa18.85■□□□□ 0.61
CLN3-216ENST00000565316 HASPINQ8TF76 798 aa18.85■□□□□ 0.61
CLN3-216ENST00000565316 RSAD2Q8WXG1 361 aa18.85■□□□□ 0.61
CLN3-216ENST00000565316 PPP1R10Q96QC0 940 aaKnown RBP18.85■□□□□ 0.61
CLN3-216ENST00000565316 PIDD1Q9HB75 910 aa18.85■□□□□ 0.61
CLN3-216ENST00000565316 DDX19AQ9NUU7 478 aaKnown RBP18.85■□□□□ 0.61
CLN3-216ENST00000565316 TNFSF13BQ9Y275 285 aa18.85■□□□□ 0.61
CLN3-216ENST00000565316 GDAQ9Y2T3 454 aa18.85■□□□□ 0.61
CLN3-216ENST00000565316 TMEM189-UBE2V1I3L0A0 370 aa18.84■□□□□ 0.61
CLN3-216ENST00000565316 NARSO43776 548 aaKnown RBP18.84■□□□□ 0.61
CLN3-216ENST00000565316 ST18O60284 1047 aa18.84■□□□□ 0.61
CLN3-216ENST00000565316 LAMP2P13473 410 aa18.84■□□□□ 0.61
CLN3-216ENST00000565316 PSMD5Q16401 504 aa18.84■□□□□ 0.61
CLN3-216ENST00000565316 PDXDC1Q6P996 788 aa18.84■□□□□ 0.61
CLN3-216ENST00000565316 RAB34Q9BZG1 259 aa18.84■□□□□ 0.61
CLN3-216ENST00000565316 WNT16Q9UBV4 365 aa18.84■□□□□ 0.61
CLN3-216ENST00000565316 PCDHB6Q9Y5E3 794 aa18.84■□□□□ 0.61
CLN3-216ENST00000565316 RIF1Q5UIP0 2472 aaKnown RBP18.83■□□□□ 0.61
CLN3-216ENST00000565316 DOCK8Q8NF50 2099 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 ANHXE9PGG2 379 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 K7ERI5 159 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 LAD1O00515 517 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 GFRA3O60609 400 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 HNRNPA1P09651 372 aaKnown RBP eCLIP18.83■□□□□ 0.61
CLN3-216ENST00000565316 FGFR3P22607 806 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 NPTX2P47972 431 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 IL17AQ16552 155 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 CD300LGQ6UXG3 332 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.83■□□□□ 0.61
CLN3-216ENST00000565316 APBB1IPQ7Z5R6 666 aaPredicted RBP18.83■□□□□ 0.61
CLN3-216ENST00000565316 DAW1Q8N136 415 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 SIX5Q8N196 739 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 FLCNQ8NFG4 579 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 SNX29Q8TEQ0 813 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 PTPRHQ9HD43 1115 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 FBXL21Q9UKT6 434 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 DNM3Q9UQ16 869 aa18.83■□□□□ 0.61
CLN3-216ENST00000565316 CFAP54Q96N23 3096 aa18.83■□□□□ 0.6
CLN3-216ENST00000565316 ADAM12O43184 909 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 PI15O43692 258 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 IGFBP6P24592 240 aaPredicted RBP18.82■□□□□ 0.6
CLN3-216ENST00000565316 HOXA9P31269 272 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 PRPHP41219 470 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 NBL1P41271 181 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 HTR4Q13639 388 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 RAB33AQ14088 237 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 XKR4Q5GH76 650 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 DCLRE1AQ6PJP8 1040 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 ALKAL1Q6UXT8 129 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 CEP57Q86XR8 500 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 UROC1Q96N76 676 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 ACO2Q99798 780 aaKnown RBP18.82■□□□□ 0.6
CLN3-216ENST00000565316 RTP3Q9BQQ7 232 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 TMEM134Q9H6X4 195 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 ARHGAP28Q9P2N2 729 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 ZFP37Q9Y6Q3 630 aaPredicted RBP18.82■□□□□ 0.6
CLN3-216ENST00000565316 VPS13AQ96RL7 3174 aa18.82■□□□□ 0.6
CLN3-216ENST00000565316 E9PMD0 336 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 POU2F2P09086 479 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 SRFP11831 508 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 GRM5P41594 1212 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 PEX3P56589 373 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 MAPK7Q13164 816 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 UPP1Q16831 310 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 C8orf34Q49A92 452 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 LIN9Q5TKA1 542 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 KRT79Q5XKE5 535 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 C1orf186Q6ZWK4 172 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 TAS1R3Q7RTX0 852 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 CCDC105Q8IYK2 499 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 MMTAG2Q9BU76 263 aaKnown RBP18.81■□□□□ 0.6
CLN3-216ENST00000565316 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.81■□□□□ 0.6
CLN3-216ENST00000565316 MTRRQ9UBK8 725 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 PHLPP2Q6ZVD8 1323 aa18.81■□□□□ 0.6
CLN3-216ENST00000565316 SMIM28A0A1B0GU29 152 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 KRBA1A5PL33 1030 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 PP2D1A8MPX8 630 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 HIP1RO75146 1068 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 B3GAT3O94766 335 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 C8AP07357 584 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 FSHRP23945 695 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 CLCNKBP51801 687 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 GLRA4Q5JXX5 417 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 RINT1Q6NUQ1 792 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 RTL10Q7L3V2 364 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 GET4Q7L5D6 327 aaPredicted RBP18.8■□□□□ 0.6
CLN3-216ENST00000565316 GRASPQ7Z6J2 395 aaPredicted RBP18.8■□□□□ 0.6
CLN3-216ENST00000565316 RUSC1Q9BVN2 902 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 CDT1Q9H211 546 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 C17orf75Q9HAS0 396 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 RBM19Q9Y4C8 960 aaKnown RBP18.8■□□□□ 0.6
CLN3-216ENST00000565316 BACE2Q9Y5Z0 518 aa18.8■□□□□ 0.6
CLN3-216ENST00000565316 PTPRZ1P23471 2315 aaPredicted RBP18.8■□□□□ 0.6
CLN3-216ENST00000565316 CCDC169A6NNP5 214 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 ABLIM1O14639 778 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 CFHP08603 1231 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 PROZP22891 400 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 OR1D2P34982 312 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms