RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ATP2A2P16615 1042 aaKnown RBP12.61□□□□□ -0.39
YBX3-213ENST00000542641 CASP4P49662 377 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 ZNF165P49910 485 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 ENOX2Q16206 610 aaKnown RBP12.61□□□□□ -0.39
YBX3-213ENST00000542641 SLC10A6Q3KNW5 377 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 LRSAM1Q6UWE0 723 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 GLB1LQ6UWU2 654 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 ABI1Q8IZP0 508 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 HELQQ8TDG4 1101 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 FBXL18Q96ME1 805 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 ZFP42Q96MM3 310 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 SLC9A7Q96T83 725 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 ANP32EQ9BTT0 268 aa12.61□□□□□ -0.39
YBX3-213ENST00000542641 SRRTQ9BXP5 876 aaKnown RBP12.61□□□□□ -0.39
YBX3-213ENST00000542641 RBAKQ9NYW8 714 aaPredicted RBP12.61□□□□□ -0.39
YBX3-213ENST00000542641 ARL5CA6NH57 179 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 LACTBL1A8MY62 500 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 OFD1O75665 1012 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 DGKIO75912 1065 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 GJB5O95377 273 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 CAVIN2O95810 425 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 CXCL8P10145 99 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 EPB41P11171 864 aaKnown RBP12.6□□□□□ -0.39
YBX3-213ENST00000542641 PSMC2P35998 433 aaKnown RBP12.6□□□□□ -0.39
YBX3-213ENST00000542641 MLH1P40692 756 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 GATMP50440 423 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 ZNF445P59923 1031 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 POU5F1Q01860 360 aaKnown RBP12.6□□□□□ -0.39
YBX3-213ENST00000542641 PPP2R3AQ06190 1150 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 CLLU1OSQ5K130 101 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 SPATA1Q5VX52 437 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 LRRC55Q6ZSA7 311 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 FILIP1Q7Z7B0 1213 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 HERC6Q8IVU3 1022 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 ZC3H3Q8IXZ2 948 aaKnown RBP12.6□□□□□ -0.39
YBX3-213ENST00000542641 FAM186BQ8IYM0 893 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 ENOX1Q8TC92 643 aaKnown RBP12.6□□□□□ -0.39
YBX3-213ENST00000542641 URGCPQ8TCY9 931 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 SNX27Q96L92 541 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 CEP63Q96MT8 703 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 RPS6KC1Q96S38 1066 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 GAD1Q99259 594 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 BPIFA3Q9BQP9 254 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 TSPY26PQ9H489 355 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 PLEKHA5Q9HAU0 1116 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 RNF19AQ9NV58 838 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 INPP5FQ9Y2H2 1132 aa12.6□□□□□ -0.39
YBX3-213ENST00000542641 TTC26A0AVF1 554 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 TBKBP1A7MCY6 615 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 MAPK13O15264 365 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 SLC16A3O15427 465 aaKnown RBP12.59□□□□□ -0.39
YBX3-213ENST00000542641 MEFVO15553 781 aaPredicted RBP12.59□□□□□ -0.39
YBX3-213ENST00000542641 IL18RAPO95256 599 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 GNA14O95837 355 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 POMCP01189 267 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 ADRB2P07550 413 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 KRT13P13646 458 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 AFF1P51825 1210 aaKnown RBP12.59□□□□□ -0.39
YBX3-213ENST00000542641 MYL5Q02045 173 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 CYP24A1Q07973 514 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 SURF1Q15526 300 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 XKR4Q5GH76 650 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 NOMO2Q5JPE7 1267 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 ALKAL1Q6UXT8 129 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 BRSK2Q8IWQ3 736 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 CD302Q8IX05 232 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 TDHQ8IZJ6 230 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 AOPEPQ8N6M6 819 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 CCDC127Q96BQ5 260 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 MFSD14AQ96MC6 490 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 CASD1Q96PB1 797 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 YME1L1Q96TA2 773 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 MKNK1Q9BUB5 465 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 TMEM117Q9H0C3 514 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 CXCL16Q9H2A7 254 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 ASB7Q9H672 318 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 PDE11AQ9HCR9 933 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 CNTN3Q9P232 1028 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 KANSL3Q9P2N6 904 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 NFE2L3Q9Y4A8 694 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 MICAL3Q7RTP6 2002 aa12.59□□□□□ -0.39
YBX3-213ENST00000542641 SMIM28A0A1B0GU29 152 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 SMTNL1A8MU46 457 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 BECN2A8MW95 431 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 TLL1O43897 1013 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 THP07101 528 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 SCNN1GP51170 649 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 SPAG1Q07617 926 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 CCDC40Q4G0X9 1142 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 PAN2Q504Q3 1202 aaKnown RBP12.58□□□□□ -0.4
YBX3-213ENST00000542641 GLRA4Q5JXX5 417 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 INTS8Q75QN2 995 aaKnown RBP12.58□□□□□ -0.4
YBX3-213ENST00000542641 CREBRFQ8IUR6 639 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 GSTCDQ8NEC7 633 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 RSPH1Q8WYR4 309 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 FNBP1Q96RU3 617 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 RAD9AQ99638 391 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 THAP9Q9H5L6 903 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 METTL14Q9HCE5 456 aaKnown RBP12.58□□□□□ -0.4
YBX3-213ENST00000542641 FANCLQ9NW38 375 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms