RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 WWC2-AS2Q96NR7 200 aa6.31□□□□□ -1.4
HMGB1P38-201ENST00000490557 MRI1Q9BV20 369 aa6.31□□□□□ -1.4
HMGB1P38-201ENST00000490557 NMRK2Q9NPI5 230 aa6.31□□□□□ -1.4
HMGB1P38-201ENST00000490557 JAG2Q9Y219 1238 aa6.31□□□□□ -1.4
HMGB1P38-201ENST00000490557 CXorf49A8MYA2 514 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 B8ZZF3 427 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 AP1G1O43747 822 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 ZNF20P17024 532 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 RAB39AQ14964 217 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 BMT2Q1RMZ1 405 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 ATXN7L2Q5T6C5 722 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 SPTY2D1Q68D10 685 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 ANKS6Q68DC2 871 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 ZGPATQ8N5A5 531 aaKnown RBP6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 CAMKK1Q8N5S9 505 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 CLIP3Q96DZ5 547 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 FAM193BQ96PV7 902 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 GPR20Q99678 358 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 LSM14BQ9BX40 385 aaKnown RBP6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 GTPBP4Q9BZE4 634 aaKnown RBP6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 KMT5AQ9NQR1 393 aa6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 AURKAIP1Q9NWT8 199 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P38-201ENST00000490557 GOLGA6CA6NDK9 693 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 GOLGA6BA6NDN3 693 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 TSPAN6O43657 245 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 AMY1AP04745 511 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 GOLGA6DP0CG33 693 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 ALAS1P13196 640 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 FPR1P21462 350 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 ACRV1P26436 265 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 SMARCA1P28370 1054 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 PCSK1P29120 753 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 ADAM17P78536 824 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 TARDBPQ13148 414 aaKnown RBP eCLIP6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 MTM1Q13496 603 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 GTF2H3Q13889 308 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 LRRC41Q15345 812 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 VPS72Q15906 364 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 METTL24Q5JXM2 366 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 CXorf57Q6NSI4 855 aaKnown RBP6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 ZNF529Q6P280 563 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 Q6ZRM9 215 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 FMNL3Q8IVF7 1028 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 WDR75Q8IWA0 830 aaKnown RBP6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 MYO1HQ8N1T3 1032 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 RNF169Q8NCN4 708 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 OR10H5Q8NGA6 315 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 OR52N2Q8NGI0 321 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 SLC35B2Q8TB61 432 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 MVB12AQ96EY5 273 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 PHACTR3Q96KR7 559 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 AIFM3Q96NN9 605 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 MNTQ99583 582 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 GOLGA6AQ9NYA3 693 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 EIF2B4Q9UI10 523 aaKnown RBP6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 POLHQ9Y253 713 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 PCDHB1Q9Y5F3 818 aa6.29□□□□□ -1.4
HMGB1P38-201ENST00000490557 KIAA0391O15091 583 aaKnown RBP6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 SLC16A6O15403 523 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 RECQL4O94761 1208 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 POMCP01189 267 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 FTLP02792 175 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 SCNN1GP51170 649 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 CTXN1P60606 82 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 RRP1BQ14684 758 aaKnown RBP6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 MINDY4Q4G0A6 757 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 FAM102BQ5T8I3 360 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 OTUD7BQ6GQQ9 843 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 C3orf20Q8ND61 904 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 NSUN6Q8TEA1 469 aaKnown RBP6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 RGMAQ96B86 450 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 CPEB1Q9BZB8 566 aaKnown RBP6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 REXO4Q9GZR2 422 aaKnown RBP6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 C11orf54Q9H0W9 315 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 CALCOCO1Q9P1Z2 691 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 TSC22D4Q9Y3Q8 395 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 TESMINQ9Y4I5 508 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 ATRNL1Q5VV63 1379 aa6.28□□□□□ -1.4
HMGB1P38-201ENST00000490557 ARIH2O95376 493 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 AMHP03971 560 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 RABGGTBP53611 331 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 ZNF267Q14586 743 aaPredicted RBP6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 MLC1Q15049 377 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 NRN1LQ496H8 165 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 KHDC1Q4VXA5 237 aaKnown RBP6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 USP39Q53GS9 565 aaKnown RBP6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 DRICH1Q6PGQ1 229 aaPredicted RBP6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 UBE3BQ7Z3V4 1068 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 PLXDC1Q8IUK5 500 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 C1orf210Q8IVY1 113 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 NLGN4YQ8NFZ3 816 aaPredicted RBP6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 IFI44Q8TCB0 444 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 HPS3Q969F9 1004 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 VRK1Q99986 396 aaPredicted RBP6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 KCNH6Q9H252 994 aa6.27□□□□□ -1.41
HMGB1P38-201ENST00000490557 MTHFD1P11586 935 aaKnown RBP6.26□□□□□ -1.41
HMGB1P38-201ENST00000490557 ZNF280AP59817 542 aaPredicted RBP6.26□□□□□ -1.41
HMGB1P38-201ENST00000490557 ATP8B2P98198 1209 aa6.26□□□□□ -1.41
HMGB1P38-201ENST00000490557 SPDYAQ5MJ70 313 aa6.26□□□□□ -1.41
HMGB1P38-201ENST00000490557 ATAT1Q5SQI0 421 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms