RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CBX1P83916 185 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 MAP2K1Q02750 393 aaPredicted RBP19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 KLHL30Q0D2K2 578 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 IQCEQ6IPM2 695 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 DPY19L2P1Q6NXN4 242 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 ENOSF1Q7L5Y1 443 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 ZSWIM2Q8NEG5 633 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 PLEKHO2Q8TD55 490 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 RPGRIP1Q96KN7 1286 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 DNAJC12Q9UKB3 198 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 ZRANB2O95218 330 aaKnown RBP eCLIP19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 IL18RAPO95256 599 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 LCA5LO95447 670 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 JAM2P57087 298 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 GABPB1Q06547 395 aaPredicted RBP19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 TEX35Q5T0J7 233 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 CCDC122Q5T0U0 273 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 ZBTB33Q86T24 672 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 RSPH3Q86UC2 560 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 SLAIN1Q8ND83 568 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 JAKMIP2Q96AA8 810 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 NT5C1BQ96P26 610 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 FAM49AQ9H0Q0 323 aaPredicted RBP19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 PTPRHQ9HD43 1115 aa19.65■□□□□ 0.74
CCDC88C-203ENST00000389856 CST5P28325 142 aaPredicted RBP19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 VAV2P52735 878 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 MFAP3P55082 362 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 AMPD2Q01433 879 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 WDR44Q5JSH3 913 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 CRELD2Q6UXH1 353 aaPredicted RBP19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 SV2AQ7L0J3 742 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 WDR49Q8IV35 697 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 LMO3Q8TAP4 145 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 ZBTB10Q96DT7 871 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 RAB20Q9NX57 234 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 ARHGAP20Q9P2F6 1191 aa19.64■□□□□ 0.73
CCDC88C-203ENST00000389856 CTAGE15A4D2H0 777 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 CCDC151A5D8V7 595 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 CABYRO75952 493 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 GFPT2O94808 682 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 EDN1P05305 212 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 CTAGE8P0CG41 777 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 SOX5P35711 763 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 EIF4A3P38919 411 aaKnown RBP19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 PRKCIP41743 596 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 KIF11P52732 1056 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 ADAM17P78536 824 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 KIF5AQ12840 1032 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 BIRC3Q13489 604 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 DCAF4L1Q3SXM0 396 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 SMYD5Q6GMV2 418 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 RNF180Q86T96 592 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 CTAGE6Q86UF2 777 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 CTAGE4Q8IX94 777 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 MSANTD4Q8NCY6 345 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 HAPLN2Q9GZV7 340 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 ZNF446Q9NWS9 450 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 CPSF3Q9UKF6 684 aaKnown RBP19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 CEP350Q5VT06 3117 aa19.63■□□□□ 0.73
CCDC88C-203ENST00000389856 SPDYE4A6NLX3 237 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 F8VZ95 297 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 M0QZ92 97 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 CLTAP09496 248 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 ELNP15502 786 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 AXLP30530 894 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 HOXC8P31273 242 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 ZACNQ401N2 412 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 C10orf76Q5T2E6 689 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 MAP3K21Q5TCX8 1036 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 PAPD7Q5XG87 772 aaKnown RBP19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 HNRNPLLQ8WVV9 542 aaKnown RBP19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 ZNF668Q96K58 619 aaPredicted RBP19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 ARID3AQ99856 593 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 BEGAINQ9BUH8 593 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 IMPG2Q9BZV3 1241 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 ADAMTS10Q9H324 1103 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 MINDY3Q9H8M7 445 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 RPF1Q9H9Y2 349 aaKnown RBP19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 PDE11AQ9HCR9 933 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 C1orf112Q9NSG2 853 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 HDAC6Q9UBN7 1215 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 GUCA1BQ9UMX6 200 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 A0A0U1RQJ8 604 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 ABLIM1O14639 778 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 PHACTR2O75167 634 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 ADAMTS4O75173 837 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 PGK1P00558 417 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 APBA1Q02410 837 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 CKAP4Q07065 602 aaKnown RBP19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 DRAP1Q14919 205 aaPredicted RBP19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 AMHR2Q16671 573 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 KIZQ2M2Z5 673 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 HGSNATQ68CP4 663 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 C15orf39Q6ZRI6 1047 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 CATSPER4Q7RTX7 472 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 TRAPPC11Q7Z392 1133 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 ATRIPQ8WXE1 791 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 POP1Q99575 1024 aaKnown RBP19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 CDT1Q9H211 546 aa19.62■□□□□ 0.73
CCDC88C-203ENST00000389856 ARFGAP3Q9NP61 516 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms