RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 ZNF185O15231 689 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 MYBP10242 640 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 SKIP12755 728 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 TAC1P20366 129 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 ATL2Q8NHH9 583 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 SCG3Q8WXD2 468 aaKnown RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 SNF8Q96H20 258 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 ATP6V1G3Q96LB4 118 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 SUCLA2Q9P2R7 463 aaPredicted RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 A0A087X0B3 334 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 SLC26A4O43511 780 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 SSTR3P32745 418 aaPredicted RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 ERVK-24P63145 666 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 ANKRD20A4Q4UJ75 823 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 ZC2HC1CQ53FD0 456 aaPredicted RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 ANKRD20A8PQ5CZ79 823 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 ANKRD20A2Q5SQ80 823 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 BEND6Q5SZJ8 279 aaPredicted RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 ANKRD20A1Q5TYW2 823 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 ZC3H18Q86VM9 953 aaKnown RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 SLC30A5Q8TAD4 765 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 TNIP3Q96KP6 325 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 ZNF560Q96MR9 790 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 GCNAQ96QF7 691 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 POLIQ9UNA4 740 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 APOBEC2Q9Y235 224 aaKnown RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 FHOD1Q9Y613 1164 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 PARP4Q9UKK3 1724 aaKnown RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 A0A1W2PQJ5 194 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 NVLO15381 856 aaKnown RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 SLC1A1P43005 524 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 FXR2P51116 673 aaKnown RBP eCLIP12.19□□□□□ -0.46
NOD1-201ENST00000222823 MXD4Q14582 209 aaPredicted RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 DDX27Q96GQ7 796 aaKnown RBP12.19□□□□□ -0.46
NOD1-201ENST00000222823 TRAIPQ9BWF2 469 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 SIK2Q9H0K1 926 aa12.19□□□□□ -0.46
NOD1-201ENST00000222823 MYO1CO00159 1063 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 SOCS7O14512 581 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 MX2P20592 715 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 PEX19P40855 299 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 ROR1Q01973 937 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 SPDYE1Q8NFV5 336 aaPredicted RBP12.18□□□□□ -0.46
NOD1-201ENST00000222823 SLC35G2Q8TBE7 412 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 ELP3Q9H9T3 547 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 AGAP1Q9UPQ3 857 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 KPNA7A9QM74 516 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 GYG2O15488 501 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 CYP2C19P33261 490 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 NCOA4Q13772 614 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 KYAT1Q16773 422 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 TEX2Q8IWB9 1127 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 NDUFAF2Q8N183 169 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 PDCD6IPQ8WUM4 868 aaKnown RBP12.18□□□□□ -0.46
NOD1-201ENST00000222823 ERGIC2Q96RQ1 377 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 DNAJC7Q99615 494 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 MXRA8Q9BRK3 442 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 HSPA8P11142 646 aaKnown RBP12.18□□□□□ -0.46
NOD1-201ENST00000222823 NFKBIAP25963 317 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 ARSEP51690 589 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 KRT17Q04695 432 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 NME3Q13232 169 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 TAF11Q15544 211 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 MKNK1Q9BUB5 465 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 MAGEB5Q9BZ81 275 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 UPF3AQ9H1J1 476 aaKnown RBP12.18□□□□□ -0.46
NOD1-201ENST00000222823 LMCD1Q9NZU5 365 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 TRIM10Q9UDY6 481 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 DCTN4Q9UJW0 460 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 INTUQ9ULD6 942 aa12.18□□□□□ -0.46
NOD1-201ENST00000222823 BAZ2BQ9UIF8 2168 aaKnown RBP12.18□□□□□ -0.46
NOD1-201ENST00000222823 IQCA1LA6NCM1 817 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 MAFGO15525 162 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 MGEA5O60502 916 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 RECQLP46063 649 aaPredicted RBP12.17□□□□□ -0.46
NOD1-201ENST00000222823 NAB2Q15742 525 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 KIAA1755Q5JYT7 1200 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 C3orf67Q6ZVT6 689 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 PID1Q7Z2X4 250 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 CDKL3Q8IVW4 592 aaPredicted RBP12.17□□□□□ -0.46
NOD1-201ENST00000222823 MS4A14Q96JA4 679 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 INTS13Q9NVM9 706 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 SNX9Q9Y5X1 595 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 FAM205AQ6ZU69 1335 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 F8W8V4 182 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 SPECC1L-ADORA2AF8WAN1 911 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 SMIM24O75264 130 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 MOCS2O96007 188 aaPredicted RBP12.17□□□□□ -0.46
NOD1-201ENST00000222823 TMCO4Q5TGY1 634 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 PLA2G4FQ68DD2 849 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 KCTD17Q8N5Z5 321 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 HIPK4Q8NE63 616 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.17□□□□□ -0.461e-6■■■■■ 55.6
NOD1-201ENST00000222823 TMEM39BQ9GZU3 492 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 SMARCAD1Q9H4L7 1026 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 SUN2Q9UH99 717 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 SCN11AQ9UI33 1791 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 FRMD3A2A2Y4 597 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 ZFXP17010 805 aaPredicted RBP12.17□□□□□ -0.46
NOD1-201ENST00000222823 NPEPPSP55786 919 aa12.17□□□□□ -0.46
NOD1-201ENST00000222823 ACTR2P61160 394 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms