RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 PPP2R2AP63151 447 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 ZNF211Q13398 564 aaPredicted RBP11.1□□□□□ -0.63
LIG1-220ENST00000601091 LLGL1Q15334 1064 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 PADI6Q6TGC4 694 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 NLRP14Q86W24 1093 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 DNAAF5Q86Y56 855 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 ANKRD42Q8N9B4 389 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 XXYLT1Q8NBI6 393 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 ANKRD49Q8WVL7 239 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 KCTD5Q9NXV2 234 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 AIPL1Q9NZN9 384 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 PHRF1Q9P1Y6 1649 aaKnown RBP11.1□□□□□ -0.63
LIG1-220ENST00000601091 DDHD2O94830 711 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 FTLP02792 175 aaPredicted RBP11.1□□□□□ -0.63
LIG1-220ENST00000601091 GCLMP48507 274 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 C6orf118Q5T5N4 469 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 MOXD1Q6UVY6 613 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 AENQ8WTP8 325 aaKnown RBP11.1□□□□□ -0.63
LIG1-220ENST00000601091 SHISA4Q96DD7 197 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 GORASP1Q9BQQ3 440 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 PACSIN1Q9BY11 444 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 EPN3Q9H201 632 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 BAIAP2L1Q9UHR4 511 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 CROTQ9UKG9 612 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 DSEQ9UL01 958 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 GLI1P08151 1106 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 PON1P27169 355 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 ALDH3A1P30838 453 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 MAPK4P31152 587 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 STX2P32856 288 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 LSP1P33241 339 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 FMO5P49326 533 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 CEP55Q53EZ4 464 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 ARHGEF16Q5VV41 709 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 CAVIN3Q969G5 261 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 RNPC3Q96LT9 517 aaKnown RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 A6NJR5 290 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 SPDYE16A6NNV3 312 aaPredicted RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 RASGRF2O14827 1237 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 THAP12O43422 761 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 CLTAP09496 248 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 DDX5P17844 614 aaKnown RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 RFX1P22670 979 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 NSFP46459 744 aaKnown RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 BPIFB4P59827 614 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 GIT2Q14161 759 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 SGO2Q562F6 1265 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 MEI1Q5TIA1 1274 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 CWF19L1Q69YN2 538 aaKnown RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 DCUN1D2Q6PH85 259 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 LRIG3Q6UXM1 1119 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 LRRC55Q6ZSA7 311 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 SLC35G2Q8TBE7 412 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 ACTR5Q9H9F9 607 aaPredicted RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 FAM187AA6NFU0 413 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 HNRNPDLO14979 420 aaKnown RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 TTI1O43156 1089 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 CPP00450 1065 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 TROVE2P10155 538 aaKnown RBP eCLIP11.09□□□□□ -0.63
LIG1-220ENST00000601091 SLCO1A2P46721 670 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 PSMD6Q15008 389 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 EPHA7Q15375 998 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 SLC27A3Q5K4L6 730 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 TTC39BQ5VTQ0 682 aaPredicted RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 DDX42Q86XP3 938 aaKnown RBP eCLIP11.09□□□□□ -0.63
LIG1-220ENST00000601091 METTL13Q8N6R0 699 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 GLIS3Q8NEA6 775 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 CCT8L2Q96SF2 557 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 KMT5AQ9NQR1 393 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 SUCLA2Q9P2R7 463 aaPredicted RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 INTUQ9ULD6 942 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 SLC45A1Q9Y2W3 748 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 MEFVO15553 781 aaPredicted RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 ENDOUP21128 410 aaKnown RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 MAN1A1P33908 653 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 VAMP7P51809 220 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 CSE1LP55060 971 aaKnown RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 LACTBP83111 547 aaPredicted RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 ROR2Q01974 943 aaKnown RBP11.09□□□□□ -0.63
LIG1-220ENST00000601091 PLPP6Q8IY26 295 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 KIAA1958Q8N8K9 716 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 OR2W6PQ8NHA6 318 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 TPCN2Q8NHX9 752 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 CASKIN2Q8WXE0 1202 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 CCT7Q99832 543 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 MKNK1Q9BUB5 465 aa11.09□□□□□ -0.63
LIG1-220ENST00000601091 GOLGA8IPA6NC78 632 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 GOLGA8JA6NMD2 632 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 ADAMTS3O15072 1205 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 KATNA1O75449 491 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 ATF2P15336 505 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 LIG4P49917 911 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 PEX3P56589 373 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 TUBA1BP68363 451 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 C15orf52Q6ZUT6 534 aaKnown RBP11.08□□□□□ -0.64
LIG1-220ENST00000601091 TUBA1AQ71U36 451 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 CLMNQ96JQ2 1002 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 FERD3LQ96RJ6 166 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 LXNQ9BS40 222 aa11.08□□□□□ -0.64
LIG1-220ENST00000601091 APEX2Q9UBZ4 518 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms