RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 TAS1R1Q7RTX1 841 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 ADGRD2Q7Z7M1 963 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 MAP4K3Q8IVH8 894 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.12□□□□□ -0.79
VPS35-206ENST00000565228 COLGALT2Q8IYK4 626 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 SLC39A11Q8N1S5 342 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 IQUBQ8NA54 791 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 KIAA0895Q8NCT3 520 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 FBXO22Q8NEZ5 403 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 CCDC51Q96ER9 411 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 FAM13BQ9NYF5 915 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 GDAQ9Y2T3 454 aa10.12□□□□□ -0.79
VPS35-206ENST00000565228 TGFB1I1O43294 461 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 TBCAO75347 108 aaKnown RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 NR1I2O75469 434 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 KRT18P05783 430 aaKnown RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 GALTP07902 379 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 HARSP12081 509 aaKnown RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 SYKP43405 635 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 BCAR1P56945 870 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 RBM10P98175 930 aaKnown RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 SPAG1Q07617 926 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 MCL1Q07820 350 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 DPYDQ12882 1025 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 STK4Q13043 487 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 GPM6BQ13491 265 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 CCDC85BQ15834 202 aaPredicted RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 KMT5BQ4FZB7 885 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 HERC4Q5GLZ8 1057 aaPredicted RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 GLRA4Q5JXX5 417 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 KCNT2Q6UVM3 1135 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 FAM178BQ8IXR5 827 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 THNSL1Q8IYQ7 743 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 TMEM87AQ8NBN3 555 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 SCFD1Q8WVM8 642 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 MRPS27Q92552 414 aaKnown RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 IPO9Q96P70 1041 aaKnown RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 MRPL4Q9BYD3 311 aaKnown RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 CUEDC2Q9H467 287 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 GOLGA2P5Q9HBQ8 144 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 OLFML3Q9NRN5 406 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 LARSQ9P2J5 1176 aaKnown RBP10.11□□□□□ -0.79
VPS35-206ENST00000565228 PARP2Q9UGN5 583 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 STYXL1Q9Y6J8 313 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 SCN1AP35498 2009 aa10.11□□□□□ -0.79
VPS35-206ENST00000565228 A0A0B4J269 797 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 FSCN2O14926 492 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 TOM1L1O75674 476 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 FGF18O76093 207 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 FOSL2P15408 326 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 IGFBP4P22692 258 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 GRM5P41594 1212 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 GUCY2FP51841 1108 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 ASIC1P78348 528 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 ZNF568Q3ZCX4 644 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 L1TD1Q5T7N2 865 aaKnown RBP10.1□□□□□ -0.79
VPS35-206ENST00000565228 MPZL3Q6UWV2 235 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 ZPBP2Q6X784 338 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 FAM43BQ6ZT52 329 aaPredicted RBP10.1□□□□□ -0.79
VPS35-206ENST00000565228 UNC13DQ70J99 1090 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 RNF168Q8IYW5 571 aaPredicted RBP10.1□□□□□ -0.79
VPS35-206ENST00000565228 LRRC43Q8N309 656 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 C3orf58Q8NDZ4 430 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 C18orf25Q96B23 403 aaPredicted RBP10.1□□□□□ -0.79
VPS35-206ENST00000565228 PPP1R10Q96QC0 940 aaKnown RBP10.1□□□□□ -0.79
VPS35-206ENST00000565228 GBP3Q9H0R5 595 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 GZF1Q9H116 711 aaPredicted RBP10.1□□□□□ -0.79
VPS35-206ENST00000565228 MRPL44Q9H9J2 332 aaKnown RBP10.1□□□□□ -0.79
VPS35-206ENST00000565228 SLC39A2Q9NP94 309 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 ANKFY1Q9P2R3 1169 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 GIT1Q9Y2X7 761 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 ATP6V1DQ9Y5K8 247 aa10.1□□□□□ -0.79
VPS35-206ENST00000565228 NRP1O14786 923 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 PPEF2O14830 753 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 GTPBP6O43824 516 aaPredicted RBP10.09□□□□□ -0.79
VPS35-206ENST00000565228 ZC3H11AO75152 810 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS35-206ENST00000565228 GCNT3O95395 438 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 ADRB2P07550 413 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 CXCL8P10145 99 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 MCF2P10911 925 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 SKIP12755 728 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 GAP43P17677 238 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 SMTNP53814 917 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 PNOCQ13519 176 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 ENOX2Q16206 610 aaKnown RBP10.09□□□□□ -0.79
VPS35-206ENST00000565228 GLB1LQ6UWU2 654 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 CLEC17AQ6ZS10 378 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 VN1R2Q8NFZ6 395 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 ZNF507Q8TCN5 953 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 POF1BQ8WVV4 589 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 AUTS2Q8WXX7 1259 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 PPM1EQ8WY54 764 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 P2RX5Q93086 422 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 PGBD4Q96DM1 585 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 B3GALT6Q96L58 329 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 SNX27Q96L92 541 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 CBWD1Q9BRT8 395 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 SEL1LQ9UBV2 794 aa10.09□□□□□ -0.79
VPS35-206ENST00000565228 C5orf42Q9H799 3197 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 DOCK6Q96HP0 2047 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms