RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 CACNA1HO95180 2353 aa14.37□□□□□ -0.11
SF3B3-202ENST00000562722 C2orf16Q68DN1 1984 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 PLXNA3P51805 1871 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 XRCC6P12956 609 aaKnown RBP eCLIP14.36□□□□□ -0.11
SF3B3-202ENST00000562722 TUSC3Q13454 348 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 PRPF4BQ13523 1007 aaKnown RBP14.36□□□□□ -0.11
SF3B3-202ENST00000562722 ANGPT1Q15389 498 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 LIN9Q5TKA1 542 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 SLC44A3Q8N4M1 653 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 DTWD2Q8NBA8 298 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 ERMNQ8TAM6 284 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 MTMR9Q96QG7 549 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 NACC1Q96RE7 527 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 PAAF1Q9BRP4 392 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 RHOBTB2Q9BYZ6 727 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 PRKD2Q9BZL6 878 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 C2orf40Q9H1Z8 148 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 TUFT1Q9NNX1 390 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.36□□□□□ -0.11
SF3B3-202ENST00000562722 FNIP2Q9P278 1114 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 WNT16Q9UBV4 365 aa14.36□□□□□ -0.11
SF3B3-202ENST00000562722 ZFHX2Q9C0A1 2572 aaPredicted RBP14.35□□□□□ -0.11
SF3B3-202ENST00000562722 ZMYM2Q9UBW7 1377 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 ARHGEF35A5YM69 484 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 N4BP3O15049 544 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 SPATA31C1P0DKV0 1188 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 SRFP11831 508 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 NEK4P51957 841 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 GUCY1B3Q02153 619 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 MAPK6Q16659 721 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 RTP2Q5QGT7 225 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 FAM171A1Q5VUB5 890 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 POTEGQ6S5H5 508 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 PPP4R3CPQ6ZMV5 832 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 CATSPER3Q86XQ3 398 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 GPR65Q8IYL9 337 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 ST13P5Q8NFI4 369 aaPredicted RBP14.35□□□□□ -0.11
SF3B3-202ENST00000562722 DEPTORQ8TB45 409 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 NXPE3Q969Y0 559 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 SNX27Q96L92 541 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 ADPGKQ9BRR6 497 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 TTPALQ9BTX7 342 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 TMEM60Q9H2L4 133 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 PDZD7Q9H5P4 517 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 TBC1D17Q9HA65 648 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 SNTG2Q9NY99 539 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 POLIQ9UNA4 740 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 TDRD15B5MCY1 1934 aaKnown RBP14.35□□□□□ -0.11
SF3B3-202ENST00000562722 MYO15AQ9UKN7 3530 aa14.35□□□□□ -0.11
SF3B3-202ENST00000562722 KRBA1A5PL33 1030 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 MED24O75448 989 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 ZMYND10O75800 440 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 RECQL4O94761 1208 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 KIF4AO95239 1232 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 C1RP00736 705 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 PRKCBP05771 671 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 THP07101 528 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 LAMP2P13473 410 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 FSHRP23945 695 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 GNL2Q13823 731 aaKnown RBP14.34□□□□□ -0.11
SF3B3-202ENST00000562722 PSMD5Q16401 504 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 SPECC1Q5M775 1068 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 PPM1LQ5SGD2 360 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 CDCA2Q69YH5 1023 aaPredicted RBP14.34□□□□□ -0.11
SF3B3-202ENST00000562722 LILRA6Q6PI73 481 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 PADI6Q6TGC4 694 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 NOSTRINQ8IVI9 506 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 KCNG4Q8TDN1 519 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 GPR152Q8TDT2 470 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 FZD8Q9H461 694 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 USP20Q9Y2K6 914 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 GDAQ9Y2T3 454 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 NUMBLQ9Y6R0 609 aa14.34□□□□□ -0.11
SF3B3-202ENST00000562722 TTLL13PA6NNM8 815 aa14.33□□□□□ -0.12
SF3B3-202ENST00000562722 ELAVL2Q12926 359 aaKnown RBP14.33□□□□□ -0.12
SF3B3-202ENST00000562722 ZNF174Q15697 407 aa14.33□□□□□ -0.12
SF3B3-202ENST00000562722 FAM187BQ17R55 369 aa14.33□□□□□ -0.12
SF3B3-202ENST00000562722 GRASPQ7Z6J2 395 aaPredicted RBP14.33□□□□□ -0.12
SF3B3-202ENST00000562722 ADSSL1Q8N142 457 aa14.33□□□□□ -0.12
SF3B3-202ENST00000562722 BSNDQ8WZ55 320 aa14.33□□□□□ -0.12
SF3B3-202ENST00000562722 POLR3CQ9BUI4 534 aaPredicted RBP14.33□□□□□ -0.12
SF3B3-202ENST00000562722 ARHGEF3Q9NR81 526 aa14.33□□□□□ -0.12
SF3B3-202ENST00000562722 FBXW11Q9UKB1 542 aa14.33□□□□□ -0.12
SF3B3-202ENST00000562722 ACKR2O00590 384 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 PTGESO14684 152 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 CCL16O15467 120 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 XYLBO75191 536 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 C8AP07357 584 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 OR52Z1P0C646 297 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 NAMPTP43490 491 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 NTHL1P78549 312 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 HTR4Q13639 388 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 PPP2R5AQ15172 486 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 HAUS3Q68CZ6 603 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 PDXDC1Q6P996 788 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 PIK3R5Q8WYR1 880 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 C8orf76Q96K31 380 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 IFT74Q96LB3 600 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 CLSTN3Q9BQT9 956 aa14.32□□□□□ -0.12
SF3B3-202ENST00000562722 KIFC3Q9BVG8 833 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms