RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 RBM43Q6ZSC3 357 aaKnown RBP23.66■■□□□ 1.38
SNX1-206ENST00000559389 LRRC43Q8N309 656 aa23.66■■□□□ 1.38
SNX1-206ENST00000559389 GAD1Q99259 594 aa23.66■■□□□ 1.38
SNX1-206ENST00000559389 MRPL9Q9BYD2 267 aaKnown RBP23.66■■□□□ 1.38
SNX1-206ENST00000559389 CGNQ9P2M7 1197 aaKnown RBP23.66■■□□□ 1.38
SNX1-206ENST00000559389 PARP2Q9UGN5 583 aa23.66■■□□□ 1.38
SNX1-206ENST00000559389 AGO2Q9UKV8 859 aaKnown RBP23.66■■□□□ 1.38
SNX1-206ENST00000559389 SOX1O00570 391 aaPredicted RBP23.65■■□□□ 1.38
SNX1-206ENST00000559389 KIAA0391O15091 583 aaKnown RBP23.65■■□□□ 1.38
SNX1-206ENST00000559389 ARHGEF15O94989 841 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 CLTAP09496 248 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 PRCPP42785 496 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 OSTNP61366 133 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 BTG3Q14201 252 aaPredicted RBP23.65■■□□□ 1.38
SNX1-206ENST00000559389 KLHL40Q2TBA0 621 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 NOMO2Q5JPE7 1267 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 HABP4Q5JVS0 413 aaKnown RBP23.65■■□□□ 1.38
SNX1-206ENST00000559389 C12orf56Q8IXR9 622 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 GOLGA5Q8TBA6 731 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 SNX27Q96L92 541 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 ZFP42Q96MM3 310 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 NKX2-4Q9H2Z4 354 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 KLK14Q9P0G3 267 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 CPSF3Q9UKF6 684 aaKnown RBP23.65■■□□□ 1.38
SNX1-206ENST00000559389 INPP5FQ9Y2H2 1132 aa23.65■■□□□ 1.38
SNX1-206ENST00000559389 LINC01553A4QN01 128 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 ARL5CA6NH57 179 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 PDXKO00764 312 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 MEFVO15553 781 aaPredicted RBP23.64■■□□□ 1.37
SNX1-206ENST00000559389 TNFSF9P41273 254 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 AFF1P51825 1210 aaKnown RBP23.64■■□□□ 1.37
SNX1-206ENST00000559389 YARSP54577 528 aaKnown RBP23.64■■□□□ 1.37
SNX1-206ENST00000559389 ZCWPW2Q504Y3 356 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 ADSSL1Q8N142 457 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 GSTCDQ8NEC7 633 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 URGCPQ8TCY9 931 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 ACAP3Q96P50 834 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 TOPORSQ9NS56 1045 aaPredicted RBP23.64■■□□□ 1.37
SNX1-206ENST00000559389 TMEM63CQ9P1W3 806 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 TRAF3IP3Q9Y228 551 aa23.64■■□□□ 1.37
SNX1-206ENST00000559389 MRPL42Q9Y6G3 142 aaKnown RBP23.64■■□□□ 1.37
SNX1-206ENST00000559389 LINC00271P0C7V0 271 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 CXCL8P10145 99 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 PPP1R2P41236 205 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 PDCD11Q14690 1871 aaKnown RBP23.63■■□□□ 1.37
SNX1-206ENST00000559389 XKR4Q5GH76 650 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 FIBCD1Q8N539 461 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 TIFAQ96CG3 184 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 SAAL1Q96ER3 474 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 RPS6KC1Q96S38 1066 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 TBC1D13Q9NVG8 400 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 HSPBP1Q9NZL4 362 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 HCSTQ9UBK5 93 aa23.63■■□□□ 1.37
SNX1-206ENST00000559389 CITO14578 2027 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 NLRC5Q86WI3 1866 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 TRIOBPQ9H2D6 2365 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 PTGESO14684 152 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 CD44P16070 742 aaKnown RBP23.62■■□□□ 1.37
SNX1-206ENST00000559389 ACOT2P49753 483 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 SCNN1GP51170 649 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 GRIK3Q13003 919 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 ENOX2Q16206 610 aaKnown RBP23.62■■□□□ 1.37
SNX1-206ENST00000559389 CRELD2Q6UXH1 353 aaPredicted RBP23.62■■□□□ 1.37
SNX1-206ENST00000559389 LRRC55Q6ZSA7 311 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 TMEM174Q8WUU8 243 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 CXCL16Q9H2A7 254 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 SEMA6BQ9H3T3 888 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 PCIF1Q9H4Z3 704 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 CNTN3Q9P232 1028 aa23.62■■□□□ 1.37
SNX1-206ENST00000559389 TDRD15B5MCY1 1934 aaKnown RBP23.62■■□□□ 1.37
SNX1-206ENST00000559389 RANBP2P49792 3224 aaKnown RBP23.61■■□□□ 1.37
SNX1-206ENST00000559389 CLIC2O15247 247 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 EXTL3O43909 919 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 LDHAP00338 332 aaKnown RBP23.61■■□□□ 1.37
SNX1-206ENST00000559389 POU5F1Q01860 360 aaKnown RBP23.61■■□□□ 1.37
SNX1-206ENST00000559389 TAP1Q03518 808 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 STIM1Q13586 685 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 NFIL3Q16649 462 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 SLC10A6Q3KNW5 377 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 PPP2R2DQ66LE6 453 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 CENPPQ6IPU0 288 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 CAVIN1Q6NZI2 390 aaKnown RBP23.61■■□□□ 1.37
SNX1-206ENST00000559389 ALKAL1Q6UXT8 129 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 SLC9A9Q8IVB4 645 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 GPD1LQ8N335 351 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 ZSWIM2Q8NEG5 633 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 CLP1Q92989 425 aaKnown RBP23.61■■□□□ 1.37
SNX1-206ENST00000559389 SYAP1Q96A49 352 aaPredicted RBP23.61■■□□□ 1.37
SNX1-206ENST00000559389 FAM213AQ9BRX8 229 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 RPF1Q9H9Y2 349 aaKnown RBP23.61■■□□□ 1.37
SNX1-206ENST00000559389 KANSL3Q9P2N6 904 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 PLAGL2Q9UPG8 496 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 ANK1P16157 1881 aa23.61■■□□□ 1.37
SNX1-206ENST00000559389 TMEM265A0A087WTH1 108 aa23.6■■□□□ 1.37
SNX1-206ENST00000559389 TTC26A0AVF1 554 aa23.6■■□□□ 1.37
SNX1-206ENST00000559389 GOLGA8IPA6NC78 632 aa23.6■■□□□ 1.37
SNX1-206ENST00000559389 GOLGA8JA6NMD2 632 aa23.6■■□□□ 1.37
SNX1-206ENST00000559389 PPP1R3GB7ZBB8 358 aa23.6■■□□□ 1.37
SNX1-206ENST00000559389 PSMA7O14818 248 aa23.6■■□□□ 1.37
SNX1-206ENST00000559389 CALUO43852 315 aaPredicted RBP23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms