RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	VPS54	Q9P1Q0	977 aa		13.84	□□□□□ -0.19
CAPN1-223	ENST00000533079	RAB23	Q9ULC3	237 aa		13.84	□□□□□ -0.19
CAPN1-223	ENST00000533079	PCDHA4	Q9UN74	947 aa		13.84	□□□□□ -0.19
CAPN1-223	ENST00000533079	COL4A3	Q01955	1670 aa		13.84	□□□□□ -0.19
CAPN1-223	ENST00000533079	FOXD2	O60548	495 aa	Predicted RBP	13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	TADA2A	O75478	443 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	ECI2	O75521	394 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	IFNAR1	P17181	557 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	TGM1	P22735	817 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	TARS	P26639	723 aa	Known RBP	13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	NPEPPS	P55786	919 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	NLRP5	P59047	1200 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	PTEN	P60484	403 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	ELAVL2	Q12926	359 aa	Known RBP	13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	TFDP1	Q14186	410 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	NTRK3	Q16288	839 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	UVSSA	Q2YD98	709 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	RTP2	Q5QGT7	225 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	LAIR1	Q6GTX8	287 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	ZNF852	Q6ZMS4	543 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	MAMSTR	Q6ZN01	415 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	TPRG1	Q6ZUI0	275 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	OTUD6A	Q7L8S5	288 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	C4orf19	Q8IY42	314 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	DAGLB	Q8NCG7	672 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	TMEM143	Q96AN5	459 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	FAM20A	Q96MK3	541 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	MTR	Q99707	1265 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	TTPAL	Q9BTX7	342 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	NFKBIZ	Q9BYH8	718 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	RNF39	Q9H2S5	420 aa		13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	NXF3	Q9H4D5	531 aa	Known RBP	13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	DDX25	Q9UHL0	483 aa	Known RBP	13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	MTF2	Q9Y483	593 aa	Predicted RBP	13.83	□□□□□ -0.2
CAPN1-223	ENST00000533079	RPL17	P18621	184 aa	Known RBP	13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	YWHAB	P31946	246 aa	Known RBP	13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	ADCY1	Q08828	1119 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	PSMD5	Q16401	504 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	GALNT17	Q6IS24	598 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	SLC27A1	Q6PCB7	646 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	SKAP1	Q86WV1	359 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	NPAS3	Q8IXF0	933 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	RASEF	Q8IZ41	740 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	GSTCD	Q8NEC7	633 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	BRF1	Q92994	677 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	LXN	Q9BS40	222 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	SLC26A6	Q9BXS9	759 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	MIOS	Q9NXC5	875 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	GDE1	Q9NZC3	331 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	DAXX	Q9UER7	740 aa	Predicted RBP	13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	VAV3	Q9UKW4	847 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	HES2	Q9Y543	173 aa		13.82	□□□□□ -0.2
CAPN1-223	ENST00000533079	CFAP47	Q6ZTR5	3102 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	INO80B-WBP1	J3KQ70	363 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079		M0R2N6	131 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	SLC30A4	O14863	429 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	GCFC2	P16383	781 aa	Known RBP	13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	MBTD1	Q05BQ5	628 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	TUSC3	Q13454	348 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	C8orf34	Q49A92	452 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	PABPC1L	Q4VXU2	614 aa	Known RBP	13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079		Q6ZUG5	572 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	TRIM22	Q8IYM9	498 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	CELF5	Q8N6W0	485 aa	Known RBP	13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	ITFG1	Q8TB96	612 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	SLC7A14	Q8TBB6	771 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	DDX1	Q92499	740 aa	Known RBP	13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	CPB2	Q96IY4	423 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	KXD1	Q9BQD3	176 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	CLSTN3	Q9BQT9	956 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	AGXT2	Q9BYV1	514 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	KCNMB3	Q9NPA1	279 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	AVEN	Q9NQS1	362 aa	Predicted RBP	13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	POLI	Q9UNA4	740 aa		13.81	□□□□□ -0.2
CAPN1-223	ENST00000533079	ACACB	O00763	2458 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	DCDC2B	A2VCK2	349 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	EML1	O00423	815 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	MAN2B1	O00754	1011 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	TBX3	O15119	743 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	CCL16	O15467	120 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	RET	P07949	1114 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	ARF4	P18085	180 aa	Predicted RBP	13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	NTHL1	P78549	312 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	AMHR2	Q16671	573 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	PPM1J	Q5JR12	505 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	BLID	Q8IZY5	108 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	ZNF579	Q8NAF0	562 aa	Known RBP	13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	LNX1	Q8TBB1	728 aa	Predicted RBP	13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	ELSPBP1	Q96BH3	223 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	APOL6	Q9BWW8	343 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	CHRD	Q9H2X0	955 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	ZSWIM4	Q9H7M6	989 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	PARD6A	Q9NPB6	346 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	WRAP73	Q9P2S5	460 aa	Predicted RBP	13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	COL4A2	P08572	1712 aa		13.8	□□□□□ -0.2
CAPN1-223	ENST00000533079	SLC37A4	O43826	429 aa		13.79	□□□□□ -0.2
CAPN1-223	ENST00000533079	KIF4A	O95239	1232 aa		13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms