RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 CHFRQ96EP1 664 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 C11orf24Q96F05 449 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 TRIM47Q96LD4 638 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 FNBP1Q96RU3 617 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 GAL3ST1Q99999 423 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 C7orf25Q9BPX7 421 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 WDR18Q9BV38 432 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 MOV10L1Q9BXT6 1211 aaKnown RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 DRC3Q9H069 523 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 INTS2Q9H0H0 1204 aaKnown RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 EHMT1Q9H9B1 1298 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 ZBTB40Q9NUA8 1239 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 ATAD3AQ9NVI7 634 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 NDUFA13Q9P0J0 144 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 VPS18Q9P253 973 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 ARHGAP28Q9P2N2 729 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 CRNNQ9UBG3 495 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 PPARGC1AQ9UBK2 798 aaKnown RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 SRRDQ9UH36 339 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 EXOC6BQ9Y2D4 811 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 CAB39Q9Y376 341 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 PTCH2Q9Y6C5 1203 aa8.08□□□□□ -1.12
HDAC3-216ENST00000523088 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.08□□□□□ -1.12
HDAC3-216ENST00000523088 BRCA2P51587 3418 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 DOCK3Q8IZD9 2030 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 TRIM75PA6NK02 468 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 PI4K2BG5E9Z4 385 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 TNFRSF10AO00220 468 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 ENC1O14682 589 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 KMOO15229 486 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 STX6O43752 255 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 PRMT3O60678 531 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 RNGTTO60942 597 aaKnown RBP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 EPN2O95208 641 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 AGR2O95994 175 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 EEF2P13639 858 aaKnown RBP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 SFPQP23246 707 aaKnown RBP eCLIP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 TRIM23P36406 574 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 RXRGP48443 463 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 TAGLNQ01995 201 aaKnown RBP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 APBA1Q02410 837 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 STK11Q15831 433 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 AMHR2Q16671 573 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 GEN1Q17RS7 908 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 FUT11Q495W5 492 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 KRBOX4Q5JUW0 171 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 TRIM68Q6AZZ1 485 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 ZSCAN25Q6NSZ9 544 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 GPAT2Q6NUI2 795 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 FAM186BQ8IYM0 893 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 MAGEB6Q8N7X4 407 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 ANKRD53Q8N9V6 530 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 PCSK9Q8NBP7 692 aaKnown RBP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 PI4K2BQ8TCG2 481 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 TGFBRAP1Q8WUH2 860 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 KIFAP3Q92845 792 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 PEX13Q92968 403 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 RNF25Q96BH1 459 aaPredicted RBP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 FAM149B1Q96BN6 582 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 COA7Q96BR5 231 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 MED30Q96HR3 178 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 CEP19Q96LK0 163 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 CRNKL1Q9BZJ0 848 aaKnown RBP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 FAM129AQ9BZQ8 928 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 SLC13A1Q9BZW2 595 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 GBP3Q9H0R5 595 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 CCDC8Q9H0W5 538 aaPredicted RBP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 SNRKQ9NRH2 765 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 RASSF1Q9NS23 344 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 MRGBPQ9NV56 204 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 TBCCD1Q9NVR7 557 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 SLC39A1Q9NY26 324 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 SUCLA2Q9P2R7 463 aaPredicted RBP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 CPA4Q9UI42 421 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 SERPINB13Q9UIV8 391 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 ADAM21Q9UKJ8 722 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 L1RE1Q9UN81 338 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 MTF2Q9Y483 593 aaPredicted RBP8.07□□□□□ -1.12
HDAC3-216ENST00000523088 ZSWIM8A7E2V4 1837 aa8.07□□□□□ -1.12
HDAC3-216ENST00000523088 TRAV6A0A075B6T7 132 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 TRIM43BA6NCK2 446 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 OR5K4A6NMS3 321 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 EBAG9O00559 213 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 TNPO2O14787 897 aaKnown RBP8.06□□□□□ -1.12
HDAC3-216ENST00000523088 ZBTB43O43298 467 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 MGRN1O60291 552 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 RANBP6O60518 1105 aaKnown RBP8.06□□□□□ -1.12
HDAC3-216ENST00000523088 RNF40O75150 1001 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 NPTXRO95502 500 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 KRT14P02533 472 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 CDK4P11802 303 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 ATP6V1B1P15313 513 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 EPB42P16452 691 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 DNAJB2P25686 324 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 DNAJA1P31689 397 aaKnown RBP8.06□□□□□ -1.12
HDAC3-216ENST00000523088 GRK4P32298 578 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 KRT9P35527 623 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 PSMC2P35998 433 aaKnown RBP8.06□□□□□ -1.12
HDAC3-216ENST00000523088 ADH7P40394 386 aa8.06□□□□□ -1.12
HDAC3-216ENST00000523088 LIFRP42702 1097 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms