RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 BICDL2A1A5D9 508 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 SYCE3A1L190 88 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 TRIM49BA6NDI0 452 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 TBKBP1A7MCY6 615 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 PPP1R3GB7ZBB8 358 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 TLL1O43897 1013 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 EXOC3O60645 756 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 NR3C1P04150 777 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 MLH1P40692 756 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 TNFSF9P41273 254 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 ACOT2P49753 483 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 SNRPFP62306 86 aaKnown RBP16.31■□□□□ 0.2
NUP54-213ENST00000513352 KYAT1Q16773 422 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 ZBTB41Q5SVQ8 909 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 RASIP1Q5U651 963 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 CEP135Q66GS9 1140 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 AGMOQ6ZNB7 445 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 MRPL10Q7Z7H8 261 aaKnown RBP16.31■□□□□ 0.2
NUP54-213ENST00000513352 ZNF598Q86UK7 904 aaKnown RBP16.31■□□□□ 0.2
NUP54-213ENST00000513352 HERC6Q8IVU3 1022 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 TMEM192Q8IY95 271 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 PHOSPHO2Q8TCD6 241 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 RPF1Q9H9Y2 349 aaKnown RBP16.31■□□□□ 0.2
NUP54-213ENST00000513352 TOPORSQ9NS56 1045 aaPredicted RBP16.31■□□□□ 0.2
NUP54-213ENST00000513352 TRIP11Q15643 1979 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 GBF1Q92538 1859 aa16.31■□□□□ 0.2
NUP54-213ENST00000513352 GRXCR1A8MXD5 290 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 KIAA0391O15091 583 aaKnown RBP16.3■□□□□ 0.2
NUP54-213ENST00000513352 EXTL3O43909 919 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 LDHAP00338 332 aaKnown RBP16.3■□□□□ 0.2
NUP54-213ENST00000513352 CLTAP09496 248 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 CXCL8P10145 99 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 CCNE1P24864 410 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 RABGGTBP53611 331 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 TYRO3Q06418 890 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 ZSCAN23Q3MJ62 389 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 CLLU1OSQ5K130 101 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 ANKRD40Q6AI12 368 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 FAM109BQ6ICB4 259 aaPredicted RBP16.3■□□□□ 0.2
NUP54-213ENST00000513352 GPD1LQ8N335 351 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 XXYLT1Q8NBI6 393 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 RDH13Q8NBN7 331 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 ZSWIM2Q8NEG5 633 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 URGCPQ8TCY9 931 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 GAD1Q99259 594 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 UBN1Q9NPG3 1134 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 RNF19AQ9NV58 838 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 COLQQ9Y215 455 aaPredicted RBP16.3■□□□□ 0.2
NUP54-213ENST00000513352 TRAF3IP3Q9Y228 551 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 GIT1Q9Y2X7 761 aa16.3■□□□□ 0.2
NUP54-213ENST00000513352 FNDC1Q4ZHG4 1894 aaPredicted RBP16.3■□□□□ 0.2
NUP54-213ENST00000513352 TDRD15B5MCY1 1934 aaKnown RBP16.29■□□□□ 0.2
NUP54-213ENST00000513352 GJB5O95377 273 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 CCDC192P0DO97 292 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 NR2F2P24468 414 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 RPL13P26373 211 aaKnown RBP16.29■□□□□ 0.2
NUP54-213ENST00000513352 PMS1P54277 932 aaKnown RBP16.29■□□□□ 0.2
NUP54-213ENST00000513352 RNASELQ05823 741 aaKnown RBP16.29■□□□□ 0.2
NUP54-213ENST00000513352 LRRC63Q05C16 580 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 PPP2R3AQ06190 1150 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 HSP90AA2PQ14568 343 aaPredicted RBP16.29■□□□□ 0.2
NUP54-213ENST00000513352 TPD52L1Q16890 204 aaPredicted RBP16.29■□□□□ 0.2
NUP54-213ENST00000513352 NOMO2Q5JPE7 1267 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 SPOUT1Q5T280 376 aaKnown RBP16.29■□□□□ 0.2
NUP54-213ENST00000513352 CENPPQ6IPU0 288 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 C12orf56Q8IXR9 622 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 ZFP42Q96MM3 310 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 TMEM117Q9H0C3 514 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 FRMD4BQ9Y2L6 1034 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 RALGAPA2Q2PPJ7 1873 aa16.29■□□□□ 0.2
NUP54-213ENST00000513352 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.28■□□□□ 0.2
NUP54-213ENST00000513352 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.28■□□□□ 0.2
NUP54-213ENST00000513352 ARL5CA6NH57 179 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 ZNF233A6NK53 670 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 CETN3O15182 167 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 FAM189A1O60320 539 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 DGKIO75912 1065 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 POMCP01189 267 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 SCNN1GP51170 649 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 ADAM9Q13443 819 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 BTG3Q14201 252 aaPredicted RBP16.28■□□□□ 0.2
NUP54-213ENST00000513352 ENOX2Q16206 610 aaKnown RBP16.28■□□□□ 0.2
NUP54-213ENST00000513352 EDRF1Q3B7T1 1238 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 ZCWPW2Q504Y3 356 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 CBWD2Q8IUF1 395 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 EEF2KMTQ96G04 330 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 SNX27Q96L92 541 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 DNAJC25Q9H1X3 360 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 PRO3102Q9H379 93 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 KIAA1586Q9HCI6 787 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 RBAKQ9NYW8 714 aaPredicted RBP16.28■□□□□ 0.2
NUP54-213ENST00000513352 RWDD2AQ9UIY3 292 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 CPSF3Q9UKF6 684 aaKnown RBP16.28■□□□□ 0.2
NUP54-213ENST00000513352 INSL6Q9Y581 213 aa16.28■□□□□ 0.2
NUP54-213ENST00000513352 OFD1O75665 1012 aa16.27■□□□□ 0.2
NUP54-213ENST00000513352 SNRNP35Q16560 246 aaKnown RBP16.27■□□□□ 0.2
NUP54-213ENST00000513352 GLRA4Q5JXX5 417 aa16.27■□□□□ 0.2
NUP54-213ENST00000513352 C11orf57Q6ZUT1 292 aaPredicted RBP16.27■□□□□ 0.2
NUP54-213ENST00000513352 SLC9A9Q8IVB4 645 aa16.27■□□□□ 0.2
NUP54-213ENST00000513352 CSGALNACT2Q8N6G5 542 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms