RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 ZNF572Q7Z3I7 529 aaPredicted RBP4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 ZNF276Q8N554 614 aa4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 CNTD1Q8N815 330 aa4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 ZFP28Q8NHY6 868 aa4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 COG1Q8WTW3 980 aa4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 CYFIP2Q96F07 1278 aa4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 ADI1Q9BV57 179 aa4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 SPON1Q9HCB6 807 aa4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 ZNF277Q9NRM2 450 aaPredicted RBP4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 CCM2LQ9NUG4 571 aaPredicted RBP4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 FAM30AQ9NZY2 134 aa4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 REXO2Q9Y3B8 237 aaKnown RBP4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 GPR45Q9Y5Y3 372 aa4.91□□□□□ -1.62
HMGB3P23-201ENST00000414981 WRNQ14191 1432 aaPredicted RBP eCLIP4.9□□□□□ -1.62
HMGB3P23-201ENST00000414981 SCAF4O95104 1147 aaKnown RBP4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 ADH4P08319 380 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 IL2RBP14784 551 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 AGXTP21549 392 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 CANXP27824 592 aaKnown RBP4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 ECHS1P30084 290 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 PTPN7P35236 360 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 SREBF1P36956 1147 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 CCT2P78371 535 aaKnown RBP4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 SP140Q13342 867 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 FHL2Q14192 279 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 CSRP2Q16527 193 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 MFSD14BQ5SR56 506 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 TMED8Q6PL24 325 aaPredicted RBP4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 RHOUQ7L0Q8 258 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 MRGPREQ86SM8 312 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 TICAM2Q86XR7 235 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 CPT1CQ8TCG5 803 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 HOXB13Q92826 284 aaPredicted RBP4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 CLIP3Q96DZ5 547 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 CEP95Q96GE4 821 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 FAM193BQ96PV7 902 aaPredicted RBP4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 PRRX2Q99811 253 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 SLC46A2Q9BY10 475 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 NRDE2Q9H7Z3 1164 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 EIF2B4Q9UI10 523 aaKnown RBP4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 ATRNL1Q5VV63 1379 aa4.9□□□□□ -1.63
HMGB3P23-201ENST00000414981 GAGE12BA1L429 117 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 GAGE12HA6NDE8 117 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 AHRRA9YTQ3 701 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 ENDOD1O94919 500 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 SNRPA1P09661 255 aaKnown RBP4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 WASP42768 502 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 PER3P56645 1201 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 CLRN1P58418 232 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 MGAT2Q10469 447 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 AMOTL1Q8IY63 956 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 TRMT2AQ8IZ69 625 aaKnown RBP4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 LARP4BQ92615 738 aaKnown RBP4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 TFAP2CQ92754 450 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 TRIM8Q9BZR9 551 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 MOCS1Q9NZB8 636 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 POGKQ9P215 609 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 PCDHGA2Q9Y5H1 932 aa4.89□□□□□ -1.63
HMGB3P23-201ENST00000414981 FAM171A2A8MVW0 826 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 CXorf49A8MYA2 514 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 ADCY6O43306 1168 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 ITGB1P05556 798 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 ALOX15P16050 662 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 NR4A1P22736 598 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 APOBEC3AP31941 199 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 IRX6P78412 446 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 AMPD3Q01432 767 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 NHLH2Q02577 135 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 NOMO1Q15155 1222 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 RRP12Q5JTH9 1297 aaKnown RBP4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 GDF7Q7Z4P5 450 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 SYT12Q8IV01 421 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 SYNE4Q8N205 404 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 PQLC1Q8N2U9 271 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 CBARPQ8N350 705 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 REPS2Q8NFH8 660 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 OR10H5Q8NGA6 315 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 SLC35B2Q8TB61 432 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 NEU4Q8WWR8 484 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 CASKIN2Q8WXE0 1202 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 MYEOVQ96EZ4 313 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 FAXDC2Q96IV6 333 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 ING1Q9UK53 422 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 CHST2Q9Y4C5 530 aa4.88□□□□□ -1.63
HMGB3P23-201ENST00000414981 TMEM200CA6NKL6 621 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 DRGXA6NNA5 263 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 ALG1L2C9J202 215 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 LEFTY2O00292 366 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 RNASET2O00584 256 aaKnown RBP4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 RPS6KA4O75676 772 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 ZSCAN20P17040 1043 aaPredicted RBP4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 LAG3P18627 525 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 GUCY1A2P33402 732 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 GUCY2FP51841 1108 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 PTTG1IPP53801 180 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 INHBCP55103 352 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 KRT85P78386 507 aa4.87□□□□□ -1.63
HMGB3P23-201ENST00000414981 TAP1Q03518 808 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms