RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 ADH1AP07327 375 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 AKAP5P24588 427 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 KLRC2P26717 231 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 TUSC3Q13454 348 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 KIAA0319Q5VV43 1072 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 KIAA1841Q6NSI8 718 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 LLGL2Q6P1M3 1020 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 RNF168Q8IYW5 571 aaPredicted RBP16■□□□□ 0.15
NIF3L1-205ENST00000409588 SPIRE2Q8WWL2 714 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 KHSRPQ92945 711 aaKnown RBP eCLIP16■□□□□ 0.15
NIF3L1-205ENST00000409588 KLHL5Q96PQ7 755 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 MMTAG2Q9BU76 263 aaKnown RBP16■□□□□ 0.15
NIF3L1-205ENST00000409588 HERC2P3Q9BVR0 1158 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 APOL6Q9BWW8 343 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 RXFP1Q9HBX9 757 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 CHST7Q9NS84 486 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 TNFSF13BQ9Y275 285 aa16■□□□□ 0.15
NIF3L1-205ENST00000409588 VWA3AA6NCI4 1184 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 CCDC169A6NNP5 214 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 B4GALT3O60512 393 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 TADA2AO75478 443 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 PDIA4P13667 645 aaKnown RBP15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 ABCD1P33897 745 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 LONP1P36776 959 aaKnown RBP15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 UBA7P41226 1012 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 NPTX2P47972 431 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 GLUD2P49448 558 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 DSG1Q02413 1049 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 ELAVL2Q12926 359 aaKnown RBP15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 USP41Q3LFD5 358 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 ATF7IP2Q5U623 682 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 PDXDC1Q6P996 788 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 CABP7Q86V35 215 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 PDCD7Q8N8D1 485 aaKnown RBP15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 BCL7CQ8WUZ0 217 aaPredicted RBP15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 EDAQ92838 391 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 CALML4Q96GE6 196 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 VN1R3Q9BXE9 311 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 MRPL4Q9BYD3 311 aaKnown RBP15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 BACH2Q9BYV9 841 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 RHOBTB2Q9BYZ6 727 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 KMT5AQ9NQR1 393 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 FNIP2Q9P278 1114 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 ADAM28Q9UKQ2 775 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 USTQ9Y2C2 406 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 HCN4Q9Y3Q4 1203 aa15.99■□□□□ 0.15
NIF3L1-205ENST00000409588 HIP1RO75146 1068 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 CNPP09543 421 aaKnown RBP15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 CDC25AP30304 524 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 CLCN4P51793 760 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 PEX3P56589 373 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 RBM10P98175 930 aaKnown RBP15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 C15orf39Q6ZRI6 1047 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 CDR2LQ86X02 465 aaPredicted RBP15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 KCNN1Q92952 543 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 FBXL18Q96ME1 805 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 SFXN1Q9H9B4 322 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 TOPORSQ9NS56 1045 aaPredicted RBP15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 MARCH5Q9NX47 278 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 SNTG2Q9NY99 539 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 LARSQ9P2J5 1176 aaKnown RBP15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 ARHGAP28Q9P2N2 729 aa15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 PRG3Q9Y2Y8 225 aaPredicted RBP15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.98■□□□□ 0.15
NIF3L1-205ENST00000409588 C5orf42Q9H799 3197 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 PP2D1A8MPX8 630 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 PLS3P13797 630 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 YARSP54577 528 aaKnown RBP15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 STRN3Q13033 797 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 HSP90AA2PQ14568 343 aaPredicted RBP15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 NT5DC1Q5TFE4 455 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 CMASQ8NFW8 434 aaPredicted RBP15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 AUTS2Q8WXX7 1259 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 RPGRIP1Q96KN7 1286 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 UROC1Q96N76 676 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 ACO2Q99798 780 aaKnown RBP15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 KCNH6Q9H252 994 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 PLEKHA4Q9H4M7 779 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 PTPRHQ9HD43 1115 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 C11orf16Q9NQ32 467 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 KLK14Q9P0G3 267 aa15.97■□□□□ 0.15
NIF3L1-205ENST00000409588 SF3B1O75533 1304 aaKnown RBP eCLIP15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 SNPHO15079 494 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 TRAPPC3O43617 180 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 RECQL4O94761 1208 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 BRD1O95696 1058 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 PLA2G4BP0C869 781 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 MCF2P10911 925 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 LIG1P18858 919 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 SLC12A3P55017 1021 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 ZRSR1Q15695 479 aaKnown RBP15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 FUT10Q6P4F1 479 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 BMP8AQ7Z5Y6 402 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 GPR149Q86SP6 731 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 DAW1Q8N136 415 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 MFSD14AQ96MC6 490 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 PNMA5Q96PV4 448 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 CCDC94Q9BW85 323 aaPredicted RBP15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 SLC38A7Q9NVC3 462 aa15.96■□□□□ 0.15
NIF3L1-205ENST00000409588 ODF2LQ9ULJ1 636 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms