RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 TRABDQ9H4I3 376 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 RNF146Q9NTX7 359 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 STX18Q9P2W9 335 aaKnown RBP12.2□□□□□ -0.46
VPS39-201ENST00000318006 SIGLEC1Q9BZZ2 1709 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 MYOM1P52179 1685 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 SSU72P8A0A1W2PR75 194 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 SUPT3HO75486 399 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 LDHAP00338 332 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 S100BP04271 92 aaPredicted RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 P4HBP07237 508 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 SCP2P22307 547 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 STAT3P40763 770 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 CARSP49589 748 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 THOC5Q13769 683 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 MORF4L2Q15014 288 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 TAF1BQ53T94 588 aaPredicted RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 SNRNP48Q6IEG0 339 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 DDX28Q9NUL7 540 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 A0A0G2JLW4 131 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 MAGEA13PA6NCF6 341 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 PRPSAP2O60256 369 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 ANP32DO95626 131 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 APOA1P02647 267 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 CD58P19256 250 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 OSTNP61366 133 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 SPP2Q13103 211 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 STRIP1Q5VSL9 837 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 ATP6V1E2Q96A05 226 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 RANBP17Q9H2T7 1088 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 ATP6V0A4Q9HBG4 840 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 SENP2Q9HC62 589 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 COL3A1P02461 1466 aaPredicted RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 DAB1O75553 588 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 QARSP47897 775 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 TRPC1P48995 793 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 MRPS15P82914 257 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 ZNF564Q8TBZ8 553 aaPredicted RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 FAM149B1Q96BN6 582 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 TRIM9Q9C026 710 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 ADA2Q9NZK5 511 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 ZFATQ9P243 1243 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 TRIM10Q9UDY6 481 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 ZNF229Q9UJW7 825 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 TTC7AQ9ULT0 858 aaPredicted RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.19□□□□□ -0.46
VPS39-201ENST00000318006 FER1L4A9Z1Z3 1794 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 CNTNAP4Q9C0A0 1308 aa12.19□□□□□ -0.46
VPS39-201ENST00000318006 H3BQF6 201 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 DEAF1O75398 565 aaPredicted RBP12.18□□□□□ -0.46
VPS39-201ENST00000318006 KRT4P19013 534 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 PDIA2Q13087 525 aaKnown RBP12.18□□□□□ -0.46
VPS39-201ENST00000318006 IZUMO3Q5VZ72 239 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 ZBED8Q8IZ13 594 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 KCNB2Q92953 911 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 CCDC195A0A1B0GUA6 201 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 SRGNP10124 158 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 FCER1AP12319 257 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 SFNP31947 248 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 CEP55Q53EZ4 464 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 PPM1NQ8N819 430 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 ISCUQ9H1K1 167 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 KIAA1586Q9HCI6 787 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 KIF20BQ96Q89 1820 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 SPATA31A5Q5VU36 1347 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 SPATA31A7Q8IWB4 1347 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 SYNJ2BP-COX16A0A087WUM0 186 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 ESRRBO95718 433 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 UBTFL6P0CB48 400 aaPredicted RBP12.18□□□□□ -0.46
VPS39-201ENST00000318006 SCTRP47872 440 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 KDSRQ06136 332 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 LAMB3Q13751 1172 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 KPNB1Q14974 876 aaKnown RBP12.18□□□□□ -0.46
VPS39-201ENST00000318006 NLRP4Q96MN2 994 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 CHCHD3Q9NX63 227 aaKnown RBP12.18□□□□□ -0.46
VPS39-201ENST00000318006 ADAM22Q9P0K1 906 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 COX16Q9P0S2 106 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 SUN2Q9UH99 717 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 LCMT1Q9UIC8 334 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 L3MBTL1Q9Y468 752 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 ANGPTL3Q9Y5C1 460 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 GCLMP48507 274 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 SLC18A3Q16572 532 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 KIF19Q2TAC6 998 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 ACBD5Q5T8D3 534 aaPredicted RBP12.18□□□□□ -0.46
VPS39-201ENST00000318006 MTBPQ96DY7 904 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 FAM193BQ96PV7 902 aaPredicted RBP12.18□□□□□ -0.46
VPS39-201ENST00000318006 CCDC90BQ9GZT6 254 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 RPF1Q9H9Y2 349 aaKnown RBP12.18□□□□□ -0.46
VPS39-201ENST00000318006 RHBDL2Q9NX52 303 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 ARHGAP26Q9UNA1 814 aa12.18□□□□□ -0.46
VPS39-201ENST00000318006 GOLGA8MH3BSY2 632 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 RAD51CO43502 376 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 ENO1P06733 434 aaKnown RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 FDX1P10109 184 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 NQO1P15559 274 aaKnown RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 RASA1P20936 1047 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 SERPINB10P48595 397 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 SLC12A1Q13621 1099 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 KLC3Q6P597 504 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 C16orf86Q6ZW13 317 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms