RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 MPZL3Q6UWV2 235 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 Q7L0L9 218 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 CLP1Q92989 425 aaKnown RBP22.26■■□□□ 1.15
PTCD3-220ENST00000627371 BICD1Q96G01 975 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 CCDC34Q96HJ3 373 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 FGFBP2Q9BYJ0 223 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 CDT1Q9H211 546 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 MRPL42Q9Y6G3 142 aaKnown RBP22.26■■□□□ 1.15
PTCD3-220ENST00000627371 ZMYM2Q9UBW7 1377 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 HNRNPDLO14979 420 aaKnown RBP22.25■■□□□ 1.15
PTCD3-220ENST00000627371 OFD1O75665 1012 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 MYBP10242 640 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 LIG4P49917 911 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 FAM26FQ5R3K3 315 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 KANK3Q6NY19 840 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 SPRED2Q7Z698 418 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 LRRC43Q8N309 656 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 DEFB123Q8N688 67 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 SAMD11Q96NU1 681 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 APOL6Q9BWW8 343 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 MRPL9Q9BYD2 267 aaKnown RBP22.25■■□□□ 1.15
PTCD3-220ENST00000627371 RNF39Q9H2S5 420 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 RWDD3Q9Y3V2 267 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 PCDHB13Q9Y5F0 798 aa22.25■■□□□ 1.15
PTCD3-220ENST00000627371 PDCD11Q14690 1871 aaKnown RBP22.24■■□□□ 1.15
PTCD3-220ENST00000627371 KLRC4O43908 158 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 PRR29P0C7W0 189 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 MCF2P10911 925 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 UBE2HP62256 183 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 L1TD1Q5T7N2 865 aaKnown RBP22.24■■□□□ 1.15
PTCD3-220ENST00000627371 HPS3Q969F9 1004 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 ZBTB45Q96K62 511 aaPredicted RBP22.24■■□□□ 1.15
PTCD3-220ENST00000627371 TIGD1Q96MW7 591 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 FAM161BQ96MY7 647 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 C17orf80Q9BSJ5 609 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 TCHPQ9BT92 498 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 ANKFY1Q9P2R3 1169 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 GIT1Q9Y2X7 761 aa22.24■■□□□ 1.15
PTCD3-220ENST00000627371 TRANK1O15050 2925 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 INPPL1O15357 1258 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 NR1I2O75469 434 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 MCL1Q07820 350 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 DPYDQ12882 1025 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 NOLC1Q14978 699 aaKnown RBP eCLIP22.23■■□□□ 1.15
PTCD3-220ENST00000627371 NOMO2Q5JPE7 1267 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 LRRC55Q6ZSA7 311 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 STXBP4Q6ZWJ1 553 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 ZBTB33Q86T24 672 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 CWH43Q9H720 699 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 CERS4Q9HA82 394 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 TYW1Q9NV66 732 aaKnown RBP22.23■■□□□ 1.15
PTCD3-220ENST00000627371 SNTG2Q9NY99 539 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 INPP5FQ9Y2H2 1132 aa22.23■■□□□ 1.15
PTCD3-220ENST00000627371 EIF3DO15371 548 aaKnown RBP eCLIP22.22■■□□□ 1.15
PTCD3-220ENST00000627371 CLDN3O15551 220 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 PRPF40AO75400 957 aaKnown RBP22.22■■□□□ 1.15
PTCD3-220ENST00000627371 AKAP5P24588 427 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 MLH1P40692 756 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 KCNA1Q09470 495 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 GRIN2CQ14957 1233 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 POSTNQ15063 836 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 EPC2Q52LR7 807 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 SLC39A4Q6P5W5 647 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 TMEM192Q8IY95 271 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 URGCPQ8TCY9 931 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 ARNTL2Q8WYA1 636 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 GBP4Q96PP9 640 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 ACCSQ96QU6 501 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 GAD1Q99259 594 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 EXOC1Q9NV70 894 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 HCSTQ9UBK5 93 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 PARP2Q9UGN5 583 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 MTUS1Q9ULD2 1270 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 EXOC7Q9UPT5 735 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 PLXNA4Q9HCM2 1894 aa22.22■■□□□ 1.15
PTCD3-220ENST00000627371 ARL5CA6NH57 179 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 RECQL4O94761 1208 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 RPN1P04843 607 aaKnown RBP22.21■■□□□ 1.15
PTCD3-220ENST00000627371 CTNNB1P35222 781 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 GRM5P41594 1212 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 KMT5BQ4FZB7 885 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 EPM2AIP1Q7L775 607 aaPredicted RBP22.21■■□□□ 1.15
PTCD3-220ENST00000627371 CEP120Q8N960 986 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 GLIS3Q8NEA6 775 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 HAPLN2Q9GZV7 340 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 TBC1D13Q9NVG8 400 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 MTMR10Q9NXD2 777 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 KANSL3Q9P2N6 904 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 UBE4BO95155 1302 aa22.21■■□□□ 1.15
PTCD3-220ENST00000627371 ANK1P16157 1881 aa22.2■■□□□ 1.14
PTCD3-220ENST00000627371 EPOPA6NHQ4 379 aa22.2■■□□□ 1.14
PTCD3-220ENST00000627371 C5orf67F2Z3F1 127 aa22.2■■□□□ 1.14
PTCD3-220ENST00000627371 KINO60870 393 aaKnown RBP22.2■■□□□ 1.14
PTCD3-220ENST00000627371 PRPF6O94906 941 aaKnown RBP22.2■■□□□ 1.14
PTCD3-220ENST00000627371 HARSP12081 509 aaKnown RBP22.2■■□□□ 1.14
PTCD3-220ENST00000627371 LAG3P18627 525 aa22.2■■□□□ 1.14
PTCD3-220ENST00000627371 BMPR1AP36894 532 aa22.2■■□□□ 1.14
PTCD3-220ENST00000627371 MATR3P43243 847 aaKnown RBP eCLIP22.2■■□□□ 1.14
PTCD3-220ENST00000627371 AFF1P51825 1210 aaKnown RBP22.2■■□□□ 1.14
PTCD3-220ENST00000627371 SPOUT1Q5T280 376 aaKnown RBP22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms