RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 PTPN22Q9Y2R2 807 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 PARP4Q9UKK3 1724 aaKnown RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 CLRN2A0PK11 232 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 ZSCAN5CA6NGD5 496 aaPredicted RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 RAD51CO43502 376 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 ZBED4O75132 1171 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 PPP1R37O75864 691 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 IL1R1P14778 569 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 NFKBIAP25963 317 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 HOXA10P31260 410 aaPredicted RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 STRN3Q13033 797 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 ARHGEF6Q15052 776 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 SH2D4BQ5SQS7 431 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 MGARPQ8TDB4 240 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 MASTLQ96GX5 879 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 NT5C1BQ96P26 610 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 TLR10Q9BXR5 811 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 NDEL1Q9GZM8 345 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 TDRD3Q9H7E2 651 aaKnown RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 POLLQ9UGP5 575 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 NAGPAQ9UK23 515 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 DAPK3O43293 454 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 MYBP10242 640 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 DLATP10515 647 aaKnown RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 TNNI1P19237 187 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 NMT1P30419 496 aaKnown RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 PSMD7P51665 324 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 GALCP54803 685 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 ALCAMQ13740 583 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 GRIK5Q16478 980 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 TBC1D10BQ4KMP7 808 aaPredicted RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 ZNF449Q6P9G9 518 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 PNMA8AQ86V59 439 aaPredicted RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 SYT2Q8N9I0 419 aaPredicted RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 ZNF384Q8TF68 577 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 SCFD1Q8WVM8 642 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 ZNF653Q96CK0 615 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 UBXN6Q9BZV1 441 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 DRC3Q9H069 523 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 TRPC5Q9UL62 973 aaPredicted RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 PPP1R9AQ9ULJ8 1098 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 CRYBG1Q9Y4K1 1723 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 HNRNPH3P31942 346 aaKnown RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 CLK1P49759 484 aaKnown RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 CBX3Q13185 183 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 AOC3Q16853 763 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 ZKSCAN4Q969J2 545 aaPredicted RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 FAM117AQ9C073 453 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 USTQ9Y2C2 406 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 SNX24Q9Y343 169 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 ARPC4-TTLL3A0A0A6YYG9 625 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 GMNCA6NCL1 334 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 EIF4E1BA6NMX2 242 aaKnown RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 PODXLO00592 558 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 PJA2O43164 708 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 NDUFB10O96000 172 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 ADCY8P40145 1251 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 DMP1Q13316 513 aaPredicted RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 MTHFD1LQ6UB35 978 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 NOP9Q86U38 636 aaKnown RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 VPS52Q8N1B4 723 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 CCDC197Q8NCU1 140 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 SLC17A8Q8NDX2 589 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 GRK7Q8WTQ7 553 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 STK33Q9BYT3 514 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 PFDN4Q9NQP4 134 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 C1orf112Q9NSG2 853 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 N4BP2Q86UW6 1770 aaPredicted RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 MED24O75448 989 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 TRIM49P0CI25 452 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 TRIM49CP0CI26 452 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 SNX16P57768 344 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 GPC5P78333 572 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 MAP7Q14244 749 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 TMEM119Q4V9L6 283 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 KCNK18Q7Z418 384 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 FAM160B2Q86V87 743 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 IPCEF1Q8WWN9 437 aaPredicted RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 POMGNT1Q8WZA1 660 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 KAT2BQ92831 832 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 ABTB1Q969K4 478 aaPredicted RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 TUFT1Q9NNX1 390 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 GALNT8Q9NY28 637 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 TUBA8Q9NY65 449 aaPredicted RBP11.11□□□□□ -0.63
LIG1-220ENST00000601091 SYNGAP1Q96PV0 1343 aa11.11□□□□□ -0.63
LIG1-220ENST00000601091 RASA4BC9J798 803 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 EVI5O60447 810 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 VPS41P49754 854 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 POLE2P56282 527 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 MAGOHP61326 146 aaKnown RBP11.1□□□□□ -0.63
LIG1-220ENST00000601091 JDP2Q8WYK2 163 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 INTS2Q9H0H0 1204 aaKnown RBP11.1□□□□□ -0.63
LIG1-220ENST00000601091 ISCUQ9H1K1 167 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 GOLPH3Q9H4A6 298 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 EPHB6O15197 1021 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 APBA3O96018 575 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 MMP10P09238 476 aa11.1□□□□□ -0.63
LIG1-220ENST00000601091 MDH1P40925 334 aaKnown RBP11.1□□□□□ -0.63
LIG1-220ENST00000601091 IFNAR2P48551 515 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms