RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 TRAK2O60296 914 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 B4GALT3O60512 393 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 ITGB1P05556 798 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 GAP43P17677 238 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 SCP2P22307 547 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 PROZP22891 400 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 CMA1P23946 247 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 AFF1P51825 1210 aaKnown RBP10.28□□□□□ -0.76
LDLR-211ENST00000560173 STRN3Q13033 797 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 DCAF4L1Q3SXM0 396 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 SPOUT1Q5T280 376 aaKnown RBP10.28□□□□□ -0.76
LDLR-211ENST00000560173 ADALQ6DHV7 355 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 HAUS6Q7Z4H7 955 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 SFR1Q86XK3 245 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 HACE1Q8IYU2 909 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 KLHL23Q8NBE8 558 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 URGCPQ8TCY9 931 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 PPM1EQ8WY54 764 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 ZNF558Q96NG5 402 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 GAD1Q99259 594 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 ADPGKQ9BRR6 497 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 TARS2Q9BW92 718 aaKnown RBP10.28□□□□□ -0.76
LDLR-211ENST00000560173 APOL6Q9BWW8 343 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 CDT1Q9H211 546 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 ZHX3Q9H4I2 956 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 MAGEF1Q9HAY2 307 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 GDPD2Q9HCC8 539 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 PTPRHQ9HD43 1115 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 AAASQ9NRG9 546 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 KCNH3Q9ULD8 1083 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 PLAGL2Q9UPG8 496 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 GIT1Q9Y2X7 761 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 PCDHB12Q9Y5F1 795 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 TCHHQ07283 1943 aa10.27□□□□□ -0.76
LDLR-211ENST00000560173 FAM237AA0A1B0GTK4 181 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 A0A1W2PQ27 194 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 A0A1W2PQ64 194 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 A0A1W2PQD8 194 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 PIGRP01833 764 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 PFKFB1P16118 471 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 AKAP5P24588 427 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 NMT1P30419 496 aaKnown RBP10.27□□□□□ -0.77
LDLR-211ENST00000560173 PBX3P40426 434 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 MLH1P40692 756 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 MRPS5P82675 430 aaKnown RBP10.27□□□□□ -0.77
LDLR-211ENST00000560173 GTF2BQ00403 316 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 PTPROQ16827 1216 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 CSPP1Q1MSJ5 1256 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 ZNF568Q3ZCX4 644 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 CNNM4Q6P4Q7 775 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 KCNT2Q6UVM3 1135 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 MPZL3Q6UWV2 235 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 ZPBP2Q6X784 338 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 APBB1IPQ7Z5R6 666 aaPredicted RBP10.27□□□□□ -0.77
LDLR-211ENST00000560173 FAM178BQ8IXR5 827 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 SLC39A11Q8N1S5 342 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 SPPL3Q8TCT6 385 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 STAMQ92783 540 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 MRPL38Q96DV4 380 aaKnown RBP10.27□□□□□ -0.77
LDLR-211ENST00000560173 ZFP42Q96MM3 310 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 GBP4Q96PP9 640 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 PYM1Q9BRP8 204 aaKnown RBP10.27□□□□□ -0.77
LDLR-211ENST00000560173 C1QTNF1Q9BXJ1 281 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 TRIM9Q9C026 710 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 LRRC27Q9C0I9 530 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 LMAN2LQ9H0V9 348 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 ST6GALNAC4Q9H4F1 302 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 SNTG2Q9NY99 539 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 SEL1LQ9UBV2 794 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 TBX20Q9UMR3 447 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 HPSEQ9Y251 543 aa10.27□□□□□ -0.77
LDLR-211ENST00000560173 ARIH1Q9Y4X5 557 aaPredicted RBP10.27□□□□□ -0.77
LDLR-211ENST00000560173 A0A1B0GVL5 298 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 ACTN4O43707 911 aaKnown RBP10.26□□□□□ -0.77
LDLR-211ENST00000560173 ZC3H11AO75152 810 aaKnown RBP eCLIP10.26□□□□□ -0.77
LDLR-211ENST00000560173 TOM1L1O75674 476 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 PPP1R37O75864 691 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 FGF18O76093 207 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 RECQL4O94761 1208 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 POMCP01189 267 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 SLFN14P0C7P3 912 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 MCF2P10911 925 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 IDEP14735 1019 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 DNAJB1P25685 340 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 ABCD1P33897 745 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 PPM1AP35813 382 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 GRM5P41594 1212 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 SCNN1GP51170 649 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 BCAR1P56945 870 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 PLCB3Q01970 1234 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 UBE3AQ05086 875 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 RNASELQ05823 741 aaKnown RBP10.26□□□□□ -0.77
LDLR-211ENST00000560173 CAMK1Q14012 370 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 TIGD5Q53EQ6 642 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 ZNF720Q7Z2F6 126 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 ZNF280BQ86YH2 543 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 MAP4K3Q8IVH8 894 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 THNSL1Q8IYQ7 743 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 MICALL1Q8N3F8 863 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 GSTCDQ8NEC7 633 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms