RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 TSKSQ9UJT2 592 aa18.25■□□□□ 0.51
LDLR-206ENST00000557958 JRKLQ9Y4A0 524 aa18.25■□□□□ 0.51
LDLR-206ENST00000557958 ZNF233A6NK53 670 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 DYNC1LI2O43237 492 aaPredicted RBP18.24■□□□□ 0.51
LDLR-206ENST00000557958 EXTL3O43909 919 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 LDHAP00338 332 aaKnown RBP18.24■□□□□ 0.51
LDLR-206ENST00000557958 ADRB2P07550 413 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 CHMP4BP1P59074 171 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 CYP24A1Q07973 514 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 PPP3CAQ08209 521 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 BMS1Q14692 1282 aaKnown RBP18.24■□□□□ 0.51
LDLR-206ENST00000557958 DRAP1Q14919 205 aaPredicted RBP18.24■□□□□ 0.51
LDLR-206ENST00000557958 ELF2Q15723 593 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 DUSP28Q4G0W2 176 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 EPC2Q52LR7 807 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 SLC39A4Q6P5W5 647 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 SRGAP1Q7Z6B7 1085 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 GPIHBP1Q8IV16 184 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 PARD3BQ8TEW8 1205 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 GOLGA1Q92805 767 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 TFR2Q9UP52 801 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 USP20Q9Y2K6 914 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 A0A087X0T9 212 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 GPR25O00155 361 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 ADCY6O43306 1168 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 FAM228BP0C875 321 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 TAS1R3Q7RTX0 852 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 PSPC1Q8WXF1 523 aaKnown RBP18.24■□□□□ 0.51
LDLR-206ENST00000557958 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.24■□□□□ 0.51
LDLR-206ENST00000557958 TRPC6Q9Y210 931 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 SAR1BQ9Y6B6 198 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 STYXL1Q9Y6J8 313 aa18.24■□□□□ 0.51
LDLR-206ENST00000557958 V9GYY5 206 aaPredicted RBP18.24■□□□□ 0.51
LDLR-206ENST00000557958 ADCY3O60266 1144 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 HBP1O60381 514 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 EVI5O60447 810 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 ZNF865P0CJ78 1059 aaPredicted RBP18.23■□□□□ 0.51
LDLR-206ENST00000557958 IFI16Q16666 785 aaKnown RBP18.23■□□□□ 0.51
LDLR-206ENST00000557958 KIAA0753Q2KHM9 967 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 PAPD7Q5XG87 772 aaKnown RBP18.23■□□□□ 0.51
LDLR-206ENST00000557958 GJB7Q6PEY0 223 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 ZNF571Q7Z3V5 609 aaPredicted RBP18.23■□□□□ 0.51
LDLR-206ENST00000557958 ZBTB8OSQ8IWT0 167 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 PDCL2Q8N4E4 241 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 LMO3Q8TAP4 145 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 CCDC127Q96BQ5 260 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 TMEM117Q9H0C3 514 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 C2orf40Q9H1Z8 148 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 ERAP1Q9NZ08 941 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 DUSP10Q9Y6W6 482 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 ZSWIM8A7E2V4 1837 aa18.23■□□□□ 0.51
LDLR-206ENST00000557958 BTNL10A8MVZ5 291 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 NAP1L1P55209 391 aaKnown RBP18.22■□□□□ 0.51
LDLR-206ENST00000557958 AMPD2Q01433 879 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 PLCB4Q15147 1175 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 NAB2Q15742 525 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 ERCC6LQ2NKX8 1250 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 C1orf220Q5T0J3 134 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 MFSD14CQ5VZR4 134 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 TRAPPC11Q7Z392 1133 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 TRIB2Q92519 343 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 FAM81BQ96LP2 452 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 FAM213AQ9BRX8 229 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 AGO2Q9UKV8 859 aaKnown RBP18.22■□□□□ 0.51
LDLR-206ENST00000557958 CKAP4Q07065 602 aaKnown RBP18.22■□□□□ 0.51
LDLR-206ENST00000557958 CAPSQ13938 189 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 TFDP1Q14186 410 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 ALKBH5Q6P6C2 394 aaKnown RBP18.22■□□□□ 0.51
LDLR-206ENST00000557958 FBXL13Q8NEE6 735 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 PPTC7Q8NI37 304 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 FNBP1Q96RU3 617 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 BEGAINQ9BUH8 593 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 UBE2TQ9NPD8 197 aaPredicted RBP18.22■□□□□ 0.51
LDLR-206ENST00000557958 NAGPAQ9UK23 515 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 AJAP1Q9UKB5 411 aaPredicted RBP18.22■□□□□ 0.51
LDLR-206ENST00000557958 INTUQ9ULD6 942 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 COQ4Q9Y3A0 265 aa18.22■□□□□ 0.51
LDLR-206ENST00000557958 CTAGE15A4D2H0 777 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 LRRIQ3A6PVS8 624 aaPredicted RBP18.21■□□□□ 0.51
LDLR-206ENST00000557958 ZNF286BP0CG31 522 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 CTAGE8P0CG41 777 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 ELNP15502 786 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 HOXD10P28358 340 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 MATR3P43243 847 aaKnown RBP eCLIP18.21■□□□□ 0.51
LDLR-206ENST00000557958 MFAP3P55082 362 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 TRIM32Q13049 653 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 NAA30Q147X3 362 aaPredicted RBP18.21■□□□□ 0.51
LDLR-206ENST00000557958 PHLDB3Q6NSJ2 640 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 ZPBP2Q6X784 338 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 CTAGE6Q86UF2 777 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 CTAGE4Q8IX94 777 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 ZSWIM2Q8NEG5 633 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 PLEKHO2Q8TD55 490 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 PRPF31Q8WWY3 499 aaKnown RBP18.21■□□□□ 0.51
LDLR-206ENST00000557958 EMID1Q96A84 441 aaPredicted RBP18.21■□□□□ 0.51
LDLR-206ENST00000557958 SUGCTQ9HAC7 445 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 ARGLU1Q9NWB6 273 aaPredicted RBP18.21■□□□□ 0.51
LDLR-206ENST00000557958 ZNF236Q9UL36 1845 aa18.21■□□□□ 0.51
LDLR-206ENST00000557958 IGKV6-21A0A0C4DH24 114 aa18.2■□□□□ 0.5
LDLR-206ENST00000557958 MOCS3O95396 460 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms